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Description : (at4g13650 : 677.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 129.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1354.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00039458-RA | |
| Cluster | HCCA clusters: Cluster_179 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 131810 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| 134463 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| 79052 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| 98955 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| At1g05750 | No alias | Pentatricopeptide repeat-containing protein At1g05750,... | 0.02 | Orthogroups_2024-Update | |
| At1g13410 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein... | 0.03 | Orthogroups_2024-Update | |
| At1g20230 | No alias | Pentatricopeptide repeat-containing protein At1g20230... | 0.03 | Orthogroups_2024-Update | |
| At5g59200 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
| Brara.F01619.1 | No alias | RNA editing factor *(ECD1) | 0.03 | Orthogroups_2024-Update | |
| Brara.J01291.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G085089 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.15G272100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
| LOC_Os07g13540 | No alias | pentatricopeptide repeat domain containing protein,... | 0.02 | Orthogroups_2024-Update | |
| MA_13057g0010 | No alias | (at4g33170 : 800.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| MA_175623g0010 | No alias | (at2g03880 : 559.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| MA_483636g0010 | No alias | (at3g61170 : 684.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| MA_57048g0010 | No alias | (at3g09040 : 636.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| MA_656915g0010 | No alias | (at4g18750 : 657.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| MA_71104g0010 | No alias | (at3g12770 : 623.0) Encodes a pentatricopeptide repeat... | 0.04 | Orthogroups_2024-Update | |
| MA_7907g0020 | No alias | (at3g57430 : 717.0) Encodes a chloroplast RNA editing... | 0.06 | Orthogroups_2024-Update | |
| PSME_00001035-RA | No alias | (at1g16480 : 699.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| Potri.006G245300 | No alias | Function unknown | 0.02 | Orthogroups_2024-Update | |
| Pp1s68_207V6 | No alias | ppr gene for putative pentatricopeptide repeat-like protein PPR | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G239000.1 | No alias | RNA editing factor *(MEF1) | 0.03 | Orthogroups_2024-Update | |
| Sopen01g032860 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen04g022860 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen11g002630 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0009314 | response to radiation | IEP | Predicted GO |
| BP | GO:0009411 | response to UV | IEP | Predicted GO |
| BP | GO:0009416 | response to light stimulus | IEP | Predicted GO |
| BP | GO:0009628 | response to abiotic stimulus | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | Predicted GO |
| BP | GO:0046486 | glycerolipid metabolic process | IEP | Predicted GO |
| MF | GO:0071949 | FAD binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 149 | 196 |
| IPR002885 | Pentatricopeptide_repeat | 552 | 599 |
| IPR002885 | Pentatricopeptide_repeat | 349 | 397 |
| IPR002885 | Pentatricopeptide_repeat | 456 | 498 |
| IPR002885 | Pentatricopeptide_repeat | 249 | 296 |
| IPR002885 | Pentatricopeptide_repeat | 652 | 700 |
| IPR032867 | DYW_dom | 826 | 950 |
| IPR002885 | Pentatricopeptide_repeat | 122 | 145 |
| IPR002885 | Pentatricopeptide_repeat | 728 | 751 |
| IPR002885 | Pentatricopeptide_repeat | 793 | 821 |
| IPR002885 | Pentatricopeptide_repeat | 527 | 550 |
| No external refs found! |