Sopen06g008460

Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Gene families : OG_42_0005060 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005060_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g008460
Cluster	HCCA clusters: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g37420	No alias	phragmoplastin interacting protein 1	0.03	Orthogroups_2024-Update
Cre10.g466450	No alias	chloroplast RNA-binding protein 29	0.01	Orthogroups_2024-Update
Seita.3G062600.1	No alias	phragmoplastin-interacting factor *(PHIP1)	0.02	Orthogroups_2024-Update
Solyc06g018110	No alias	RNA binding protein	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	199	267
IPR000504	RRM_dom	104	171
IPR001878	Znf_CCHC	310	327

External Links

No external refs found!