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  5. PSME_00039588-RA

PSME_00039588-RA


Description : (at5g19160 : 474.0) Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).; TRICHOME BIREFRINGENCE-LIKE 11 (TBL11); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G06080.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 948.0) & (original description: no original description)


Gene families : OG_42_0000293 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000293_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00039588-RA
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
A4A49_06264 No alias protein trichome birefringence 0.03 Orthogroups_2024-Update
A4A49_15386 No alias protein trichome birefringence 0.02 Orthogroups_2024-Update
Bradi5g15190 No alias Plant protein of unknown function (DUF828) 0.02 Orthogroups_2024-Update
Brara.A03370.1 No alias polysaccharide O-acetyltransferase *(TBR) 0.02 Orthogroups_2024-Update
HORVU7Hr1G035050.1 No alias polysaccharide O-acetyltransferase *(TBR) 0.03 Orthogroups_2024-Update
LOC_Os07g46230 No alias expressed protein 0.03 Orthogroups_2024-Update
MA_10436441g0010 No alias (at3g12060 : 362.0) Encodes a member of the TBL... 0.05 Orthogroups_2024-Update
PSME_00020911-RA No alias (at5g06700 : 355.0) Encodes a member of the TBL... 0.03 Orthogroups_2024-Update
PSME_00040350-RA No alias (at5g06700 : 263.0) Encodes a member of the TBL... 0.03 Orthogroups_2024-Update
PSME_00044947-RA No alias (at5g20590 : 346.0) Encodes a member of the TBL... 0.04 Orthogroups_2024-Update
Potri.008G108500 No alias TRICHOME BIREFRINGENCE-LIKE 4 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
InterPro domains Description Start Stop
IPR025846 PMR5_N_dom 130 182
IPR026057 PC-Esterase 183 468
No external refs found!