Description : (q7xun2|mad17_orysa : 111.0) MADS-box transcription factor 17 (OsMADS17) (NMADS3) (RMADS213) - Oryza sativa (Rice) & (at2g45650 : 95.9) sequence suggests this encodes a MADS-box transcription factor; AGAMOUS-like 6 (AGL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, floral organ development; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 13 (TAIR:AT3G61120.1); Has 7294 Blast hits to 7293 proteins in 914 species: Archae - 0; Bacteria - 0; Metazoa - 630; Fungi - 307; Plants - 6281; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (reliability: 191.8) & (original description: no original description)
Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00039603-RA | |
Cluster | HCCA clusters: Cluster_460 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Brara.K00360.1 | No alias | MADS/AGL-type transcription factor | 0.02 | Orthogroups_2024-Update | |
GRMZM2G026223 | No alias | AGAMOUS-like 20 | 0.01 | Orthogroups_2024-Update | |
GRMZM2G171365 | No alias | AGAMOUS-like 20 | 0.01 | Orthogroups_2024-Update | |
HORVU3Hr1G095080.1 | No alias | MADS/AGL-type transcription factor | 0.06 | Orthogroups_2024-Update | |
LOC_Os01g66030 | No alias | OsMADS2 - MADS-box family gene with MIKCc type-box, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os02g07430 | No alias | OsMADS29 - MADS-box family gene with MIKCc type-box, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os09g02780 | No alias | OsMADS77 - MADS-box family gene with M-alpha type-box, expressed | 0.03 | Orthogroups_2024-Update | |
Seita.4G160200.1 | No alias | MADS/AGL-type transcription factor | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | InterProScan predictions |
CC | GO:0005634 | nucleus | IEA | InterProScan predictions |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006644 | phospholipid metabolic process | IEP | Predicted GO |
BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Predicted GO |
BP | GO:0006658 | phosphatidylserine metabolic process | IEP | Predicted GO |
BP | GO:0006659 | phosphatidylserine biosynthetic process | IEP | Predicted GO |
BP | GO:0008610 | lipid biosynthetic process | IEP | Predicted GO |
BP | GO:0008654 | phospholipid biosynthetic process | IEP | Predicted GO |
BP | GO:0019637 | organophosphate metabolic process | IEP | Predicted GO |
BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0044255 | cellular lipid metabolic process | IEP | Predicted GO |
BP | GO:0045017 | glycerolipid biosynthetic process | IEP | Predicted GO |
BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | Predicted GO |
BP | GO:0046486 | glycerolipid metabolic process | IEP | Predicted GO |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002487 | TF_Kbox | 26 | 90 |
No external refs found! |