Description : (at5g39710 : 272.0) EMBRYO DEFECTIVE 2745 (EMB2745); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 65335 Blast hits to 15466 proteins in 320 species: Archae - 6; Bacteria - 88; Metazoa - 1398; Fungi - 1479; Plants - 59659; Viruses - 0; Other Eukaryotes - 2705 (source: NCBI BLink). & (q76c99|rf1_orysa : 238.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 538.0) & (original description: no original description)
Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00039610-RA | |
Cluster | HCCA clusters: Cluster_161 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
402234 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.06 | Orthogroups_2024-Update | |
420699 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
421992 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
428276 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.04 | Orthogroups_2024-Update | |
55637 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G105229 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.02G000600 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.02 | Orthogroups_2024-Update | |
Glyma.19G129900 | No alias | PENTATRICOPEPTIDE REPEAT 596 | 0.02 | Orthogroups_2024-Update | |
MA_29806g0010 | No alias | (at1g60770 : 282.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
PSME_00052183-RA | No alias | (at1g02150 : 315.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
Pp1s382_20V6 | No alias | F5I6.2; DNA-binding protein, putative [Arabidopsis thaliana] | 0.02 | Orthogroups_2024-Update | |
Sopen02g023180 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Predicted GO |
MF | GO:0005085 | guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0005088 | Ras guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0005089 | Rho guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
CC | GO:0005839 | proteasome core complex | IEP | Predicted GO |
MF | GO:0017016 | Ras GTPase binding | IEP | Predicted GO |
MF | GO:0017048 | Rho GTPase binding | IEP | Predicted GO |
MF | GO:0031267 | small GTPase binding | IEP | Predicted GO |
MF | GO:0051020 | GTPase binding | IEP | Predicted GO |
MF | GO:0070003 | threonine-type peptidase activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 379 | 420 |
IPR002885 | Pentatricopeptide_repeat | 68 | 115 |
IPR002885 | Pentatricopeptide_repeat | 172 | 219 |
IPR002885 | Pentatricopeptide_repeat | 5 | 46 |
IPR002885 | Pentatricopeptide_repeat | 244 | 291 |
IPR002885 | Pentatricopeptide_repeat | 341 | 373 |
IPR002885 | Pentatricopeptide_repeat | 135 | 165 |
IPR002885 | Pentatricopeptide_repeat | 491 | 520 |
No external refs found! |