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  5. PSME_00039642-RA

PSME_00039642-RA


Description : (at5g44700 : 327.0) Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.; GASSHO 2 (GSO2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, embryo sac development, embryo development, epidermis development; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 300710 Blast hits to 146614 proteins in 5000 species: Archae - 184; Bacteria - 28098; Metazoa - 99114; Fungi - 12121; Plants - 127107; Viruses - 448; Other Eukaryotes - 33638 (source: NCBI BLink). & (p93194|rpk1_iponi : 286.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 654.0) & (original description: no original description)


Gene families : OG_42_0002753 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002753_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00039642-RA
Cluster HCCA clusters: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
MA_10426304g0010 No alias (at3g05660 : 99.8) receptor like protein 33 (RLP33);... 0.06 Orthogroups_2024-Update
MA_10432854g0010 No alias (at2g34930 : 178.0) disease resistance family protein /... 0.03 Orthogroups_2024-Update
MA_82361g0020 No alias (at3g05660 : 111.0) receptor like protein 33 (RLP33);... 0.04 Orthogroups_2024-Update
MA_827806g0010 No alias (at3g05660 : 132.0) receptor like protein 33 (RLP33);... 0.03 Orthogroups_2024-Update
PSME_00003042-RA No alias (at4g20140 : 307.0) Encodes GASSHO1 (GSO1), a putative... 0.08 Orthogroups_2024-Update
PSME_00013232-RA No alias (at4g20140 : 303.0) Encodes GASSHO1 (GSO1), a putative... 0.04 Orthogroups_2024-Update
PSME_00016975-RA No alias (at1g35710 : 307.0) Protein kinase family protein with... 0.07 Orthogroups_2024-Update
PSME_00020592-RA No alias (at3g47570 : 181.0) Leucine-rich repeat protein kinase... 0.04 Orthogroups_2024-Update
PSME_00027287-RA No alias (at4g20140 : 366.0) Encodes GASSHO1 (GSO1), a putative... 0.04 Orthogroups_2024-Update
PSME_00035252-RA No alias (at3g28890 : 187.0) receptor like protein 43 (RLP43);... 0.06 Orthogroups_2024-Update
PSME_00043940-RA No alias (at5g46330 : 333.0) Encodes a leucine-rich repeat... 0.05 Orthogroups_2024-Update
PSME_00046095-RA No alias (at3g05660 : 121.0) receptor like protein 33 (RLP33);... 0.03 Orthogroups_2024-Update
PSME_00049138-RA No alias (at4g20140 : 429.0) Encodes GASSHO1 (GSO1), a putative... 0.04 Orthogroups_2024-Update
PSME_00052365-RA No alias (at3g24240 : 207.0) Leucine-rich repeat receptor-like... 0.04 Orthogroups_2024-Update
PSME_00053048-RA No alias (at5g25910 : 241.0) putative disease resistance protein... 0.04 Orthogroups_2024-Update
PSME_00054787-RA No alias (at5g62230 : 196.0) Encodes a receptor-like kinase that,... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 313 372
IPR001611 Leu-rich_rpt 409 468
IPR001611 Leu-rich_rpt 517 571
IPR001611 Leu-rich_rpt 790 846
IPR001611 Leu-rich_rpt 1009 1063
IPR001611 Leu-rich_rpt 114 172
IPR013210 LRR_N_plant-typ 43 83
IPR001611 Leu-rich_rpt 289 308
No external refs found!