1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00039709-RA

PSME_00039709-RA


Description : (at5g03760 : 369.0) encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.; ATCSLA09; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A02 (TAIR:AT5G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 738.0) & (original description: no original description)


Gene families : OG_42_0000129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00039709-RA
Cluster HCCA clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
230176 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.01 Orthogroups_2024-Update
A4A49_03777 No alias putative xyloglucan glycosyltransferase 12 0.01 Orthogroups_2024-Update
A4A49_62992 No alias glucomannan 4-beta-mannosyltransferase 9 0.02 Orthogroups_2024-Update
At1g24070 No alias Probable glucomannan 4-beta-mannosyltransferase 10... 0.04 Orthogroups_2024-Update
Bradi3g06740 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g36697 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.03 Orthogroups_2024-Update
Brara.A00614.1 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.02 Orthogroups_2024-Update
Brara.C01013.1 No alias EC_2.4 glycosyltransferase & mannan synthase *(CSLA) 0.02 Orthogroups_2024-Update
Brara.C04516.1 No alias EC_2.4 glycosyltransferase & mannan synthase *(CSLA) 0.02 Orthogroups_2024-Update
GRMZM2G105631 No alias cellulose synthase-like A02 0.01 Orthogroups_2024-Update
GRMZM2G107754 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G405567 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G201700 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G150700 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.01 Orthogroups_2024-Update
HORVU4Hr1G000610.1 No alias EC_2.4 glycosyltransferase & mannan synthase *(CSLA) 0.01 Orthogroups_2024-Update
HORVU4Hr1G037380.3 No alias Unknown function 0.01 Orthogroups_2024-Update
LOC_Os03g26044 No alias CSLA5 - cellulose synthase-like family A; mannan... 0.01 Orthogroups_2024-Update
LOC_Os08g15420 No alias CSLC3 - cellulose synthase-like family C, expressed 0.01 Orthogroups_2024-Update
LOC_Os09g39920 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
PSME_00009942-RA No alias (at4g07960 : 274.0) encodes a gene similar to cellulose... 0.01 Orthogroups_2024-Update
PSME_00019217-RA No alias (at4g31590 : 185.0) encodes a gene similar to cellulose... 0.01 Orthogroups_2024-Update
PSME_00044497-RA No alias (at5g03760 : 414.0) encodes a beta-mannan synthase that... 0.01 Orthogroups_2024-Update
Potri.002G114200 No alias Cellulose-synthase-like C12 0.02 Orthogroups_2024-Update
Potri.004G189000 No alias cellulose synthase-like A02 0.01 Orthogroups_2024-Update
Potri.006G116900 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.01 Orthogroups_2024-Update
Potri.008G026400 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.03 Orthogroups_2024-Update
Potri.009G149700 No alias cellulose synthase-like A02 0.01 Orthogroups_2024-Update
Seita.2G139000.1 No alias EC_2.4 glycosyltransferase & mannan synthase *(CSLA) 0.01 Orthogroups_2024-Update
Sobic.003G308100.1 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.03 Orthogroups_2024-Update
Sobic.004G238700.1 No alias EC_2.4 glycosyltransferase & mannan synthase *(CSLA) 0.04 Orthogroups_2024-Update
Sobic.007G090600.1 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.01 Orthogroups_2024-Update
Solyc12g088240 No alias Cellulose synthase-like protein (AHRD V3.3 *** L0ASJ1_POPTO) 0.01 Orthogroups_2024-Update
Sopen09g003750 No alias Glycosyltransferase like family 2 0.01 Orthogroups_2024-Update
Sopen11g003450 No alias Glycosyltransferase like family 2 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!