PSME_00039722-RA

Description : (at5g05390 : 721.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q40588|aso_tobac : 235.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Nicotiana tabacum (Common tobacco) & (reliability: 1442.0) & (original description: no original description)

Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00039722-RA
Cluster	HCCA clusters: Cluster_295

Target	Alias	Description	ECC score	Gene Family Method
A4A49_05486	No alias	laccase-17	0.03	Orthogroups_2024-Update
A4A49_18512	No alias	laccase-3	0.02	Orthogroups_2024-Update
A4A49_27562	No alias	laccase-17	0.03	Orthogroups_2024-Update
Brara.J01366.1	No alias	lignin laccase & EC_1.10 oxidoreductase acting on...	0.02	Orthogroups_2024-Update
MA_33288g0010	No alias	(at5g05390 : 575.0) putative laccase, a member of...	0.04	Orthogroups_2024-Update
PSME_00001502-RA	No alias	(at2g38080 : 615.0) Encodes a protein with similarity to...	0.05	Orthogroups_2024-Update
PSME_00010271-RA	No alias	(at5g05390 : 664.0) putative laccase, a member of...	0.03	Orthogroups_2024-Update
PSME_00015480-RA	No alias	(at5g05390 : 777.0) putative laccase, a member of...	0.04	Orthogroups_2024-Update
PSME_00026986-RA	No alias	(at5g05390 : 621.0) putative laccase, a member of...	0.03	Orthogroups_2024-Update
PSME_00028638-RA	No alias	(at5g05390 : 656.0) putative laccase, a member of...	0.04	Orthogroups_2024-Update
PSME_00035589-RA	No alias	(at5g05390 : 699.0) putative laccase, a member of...	0.04	Orthogroups_2024-Update
PSME_00044158-RA	No alias	(at2g40370 : 673.0) putative laccase, a member of...	0.05	Orthogroups_2024-Update
PSME_00044448-RA	No alias	(at5g05390 : 808.0) putative laccase, a member of...	0.04	Orthogroups_2024-Update
Potri.001G054600	No alias	laccase 17	0.03	Orthogroups_2024-Update
Potri.007G023300	No alias	laccase 11	0.03	Orthogroups_2024-Update
Potri.009G102700	No alias	laccase 11	0.03	Orthogroups_2024-Update
Pp1s17_180V6	No alias	laccase 90c	0.03	Orthogroups_2024-Update
Seita.5G377700.1	No alias	lignin laccase & EC_1.10 oxidoreductase acting on...	0.03	Orthogroups_2024-Update
Seita.5G457800.1	No alias	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	Orthogroups_2024-Update
Sobic.004G236100.1	No alias	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	Orthogroups_2024-Update
Solyc02g062650	No alias	Laccase (AHRD V3.3 *** I1J8U1_SOYBN)	0.02	Orthogroups_2024-Update
Sopen02g029810	No alias	Multicopper oxidase	0.03	Orthogroups_2024-Update
Sopen09g005720	No alias	Multicopper oxidase	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0055114	oxidation-reduction process	IEA	InterProScan predictions

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000776	kinetochore	IEP	Predicted GO
MF	GO:0004601	peroxidase activity	IEP	Predicted GO
BP	GO:0006979	response to oxidative stress	IEP	Predicted GO
MF	GO:0016209	antioxidant activity	IEP	Predicted GO
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Predicted GO
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predicted GO
CC	GO:0031262	Ndc80 complex	IEP	Predicted GO
MF	GO:0045735	nutrient reservoir activity	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011707	Cu-oxidase_3	73	172
IPR011706	Cu-oxidase_2	439	572
IPR001117	Cu-oxidase	186	336

External Links

No external refs found!

PSME_00039722-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation