1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00039747-RA

PSME_00039747-RA


Description : (at1g68920 : 174.0) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: cryptochrome-interacting basic-helix-loop-helix 5 (TAIR:AT1G26260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description)


Gene families : OG_42_0022386 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00039747-RA
Cluster HCCA clusters: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
MA_52085g0010 No alias (at3g07340 : 172.0) basic helix-loop-helix (bHLH)... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 313 360
No external refs found!