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  5. PSME_00039935-RA

PSME_00039935-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000300 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000300_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00039935-RA
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
A4A49_24318 No alias non-specific lipid-transfer protein-like protein 0.03 Orthogroups_2024-Update
A4A49_28568 No alias non-specific lipid transfer protein gpi-anchored 2 0.03 Orthogroups_2024-Update
At3g43720 No alias Non-specific lipid transfer protein GPI-anchored 2... 0.04 Orthogroups_2024-Update
Bradi1g71680 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.01 Orthogroups_2024-Update
Brara.C03880.1 No alias arabinogalactan protein *(Xylogen) 0.02 Orthogroups_2024-Update
Brara.E01987.1 No alias arabinogalactan protein *(Xylogen) 0.03 Orthogroups_2024-Update
Glyma.11G008000 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 Orthogroups_2024-Update
HORVU3Hr1G079800.1 No alias arabinogalactan protein *(Xylogen) 0.02 Orthogroups_2024-Update
LOC_Os01g59870 No alias LTPL65 - Protease inhibitor/seed storage/LTP family... 0.03 Orthogroups_2024-Update
LOC_Os07g07790 No alias LTPL75 - Protease inhibitor/seed storage/LTP family... 0.03 Orthogroups_2024-Update
MA_115537g0010 No alias no hits & (original description: no original description) 0.07 Orthogroups_2024-Update
MA_494876g0010 No alias (at3g22600 : 82.0) Bifunctional inhibitor/lipid-transfer... 0.04 Orthogroups_2024-Update
MA_50191g0010 No alias no hits & (original description: no original description) 0.08 Orthogroups_2024-Update
MA_71069g0010 No alias (at3g22600 : 86.7) Bifunctional inhibitor/lipid-transfer... 0.03 Orthogroups_2024-Update
PSME_00013382-RA No alias (at4g14815 : 89.0) Bifunctional inhibitor/lipid-transfer... 0.04 Orthogroups_2024-Update
Potri.001G210100 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.02 Orthogroups_2024-Update
Potri.004G196000 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.05 Orthogroups_2024-Update
Pp1s2_402V6 No alias collagen alpha 0.02 Orthogroups_2024-Update
Pp1s309_9V6 No alias lipid transfer protein 0.04 Orthogroups_2024-Update
Pp1s51_140V6 No alias lipid binding 0.02 Orthogroups_2024-Update
Pp1s61_309V6 No alias nonspecific lipid-transfer protein 0.03 Orthogroups_2024-Update
Seita.2G050200.1 No alias arabinogalactan protein *(Xylogen) 0.02 Orthogroups_2024-Update
Sopen09g027210 No alias Probable lipid transfer 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR016140 Bifunc_inhib/LTP/seed_store 5 105
No external refs found!