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  5. PSME_00039952-RA

PSME_00039952-RA


Description : (at5g05290 : 224.0) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio); expansin A2 (EXPA2); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A8 (TAIR:AT2G40610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q9m4x7|expa6_orysa : 224.0) Expansin-A6 precursor (OsEXPA6) (Alpha-expansin-6) (OsEXP6) (OsaEXPa1.24) - Oryza sativa (Rice) & (reliability: 448.0) & (original description: no original description)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00039952-RA
Cluster HCCA clusters: Cluster_786

Target Alias Description ECC score Gene Family Method Actions
174522 No alias expansin A8 0.03 Orthogroups_2024-Update
409954 No alias expansin A8 0.02 Orthogroups_2024-Update
419575 No alias expansin A16 0.02 Orthogroups_2024-Update
At5g02260 No alias EXPA9 [Source:UniProtKB/TrEMBL;Acc:A0A178UHJ8] 0.03 Orthogroups_2024-Update
At5g39260 No alias Expansin-A21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL81] 0.02 Orthogroups_2024-Update
GRMZM2G414779 No alias expansin 11 0.02 Orthogroups_2024-Update
LOC_Os06g01920 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10020g0010 No alias (at1g26770 : 369.0) Encodes an expansin. Naming... 0.06 Orthogroups_2024-Update
Mp2g18600.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Mp4g06560.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp4g22180.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp8g18860.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00011353-RA No alias (at2g40610 : 387.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
PSME_00011357-RA No alias (at2g40610 : 390.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
PSME_00022187-RA No alias (at1g69530 : 343.0) Member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00050247-RA No alias (at2g40610 : 400.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00051669-RA No alias (at2g40610 : 425.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00051759-RA No alias (at2g40610 : 368.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Potri.013G154700 No alias expansin A8 0.02 Orthogroups_2024-Update
Sobic.003G338801.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.010G006200.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sopen06g032650 No alias Pollen allergen 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009150 purine ribonucleotide metabolic process IEP Predicted GO
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Predicted GO
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009259 ribonucleotide metabolic process IEP Predicted GO
BP GO:0009260 ribonucleotide biosynthetic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0046390 ribose phosphate biosynthetic process IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 161 243
IPR006133 DNA-dir_DNA_pol_B_exonuc 10 84
IPR007117 Expansin_CBD 254 318
No external refs found!