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  5. Sopen06g008750

Sopen06g008750


Description : Retroviral aspartyl protease


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g008750
Cluster HCCA clusters: Cluster_299

Target Alias Description ECC score Gene Family Method Actions
Cre01.g006402 No alias Function unknown 0.02 Orthogroups_2024-Update
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
Cre17.g733425 No alias Function unknown 0.02 Orthogroups_2024-Update
Kfl01067_g1 kfl01067_g1_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os05g17830 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g17470 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g42880 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Solyc08g044450 No alias No description available 0.04 Orthogroups_2024-Update
Solyc09g015540 No alias No description available 0.03 Orthogroups_2024-Update
Solyc12g019380 No alias No description available 0.04 Orthogroups_2024-Update
Sopen01g012600 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen06g012360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g004730 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g027770 No alias Cytochrome P450 0.03 Orthogroups_2024-Update
Sopen09g016630 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen11g009630 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen11g009960 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 1390 1486
IPR028919 Viral_movement 1144 1232
No external refs found!