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  5. PSME_00040214-RA

PSME_00040214-RA


Description : (at5g01720 : 553.0) RNI-like superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G27920.1); Has 15959 Blast hits to 6468 proteins in 357 species: Archae - 0; Bacteria - 920; Metazoa - 6194; Fungi - 1434; Plants - 4975; Viruses - 16; Other Eukaryotes - 2420 (source: NCBI BLink). & (reliability: 1106.0) & (original description: no original description)


Gene families : OG_42_0001322 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001322_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00040214-RA
Cluster HCCA clusters: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G022298 No alias F-box family protein 0.02 Orthogroups_2024-Update
Potri.013G013100 No alias F-box family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004860 protein kinase inhibitor activity IEP Predicted GO
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
BP GO:0007050 cell cycle arrest IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019210 kinase inhibitor activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 176 196
IPR001611 Leu-rich_rpt 250 273
IPR001611 Leu-rich_rpt 480 503
IPR001611 Leu-rich_rpt 404 426
IPR001611 Leu-rich_rpt 454 477
IPR001611 Leu-rich_rpt 325 348
IPR001611 Leu-rich_rpt 428 450
IPR001611 Leu-rich_rpt 557 578
No external refs found!