PSME_00040346-RA

Description : (p50567|h2a_chlre : 144.0) Histone H2A - Chlamydomonas reinhardtii & (at5g02560 : 140.0) Encodes HTA12, a histone H2A protein.; histone H2A 12 (HTA12); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 6 (TAIR:AT5G59870.1). & (reliability: 280.0) & (original description: no original description)

Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00040346-RA
Cluster	HCCA clusters: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g25390	No alias	histone H2A 10	0.02	Orthogroups_2024-Update
Brara.B00055.1	No alias	histone *(H2A)	0.03	Orthogroups_2024-Update
Cre06.g264950	No alias	histone H2A 10	0.03	Orthogroups_2024-Update
Cre06.g265350	No alias	histone H2A 10	0.02	Orthogroups_2024-Update
Cre06.g268050	No alias	histone H2A 10	0.02	Orthogroups_2024-Update
Cre06.g268300	No alias	histone H2A 10	0.03	Orthogroups_2024-Update
Cre06.g274200	No alias	histone H2A 10	0.03	Orthogroups_2024-Update
Cre06.g275850	No alias	histone H2A 10	0.02	Orthogroups_2024-Update
Cre12.g505550	No alias	histone H2A 10	0.02	Orthogroups_2024-Update
Cre12.g506250	No alias	histone H2A 10	0.02	Orthogroups_2024-Update
Cre13.g570100	No alias	histone H2A 10	0.04	Orthogroups_2024-Update
Cre17.g708550	No alias	histone H2A 10	0.02	Orthogroups_2024-Update
Cre17.g709200	No alias	histone H2A 10	0.02	Orthogroups_2024-Update
Cre17.g711700	No alias	histone H2A 10	0.03	Orthogroups_2024-Update
Cre17.g713400	No alias	histone H2A 10	0.02	Orthogroups_2024-Update
GRMZM2G151826	No alias	histone H2A 2	0.03	Orthogroups_2024-Update
HORVU6Hr1G006140.1	No alias	histone *(H2A)	0.04	Orthogroups_2024-Update
LOC_Os03g17100	No alias	Core histone H2A/H2B/H3/H4 domain containing protein,...	0.02	Orthogroups_2024-Update
MA_22203g0020	No alias	(at5g54640 : 145.0) Isolated from T-DNA insertion line,...	0.03	Orthogroups_2024-Update
PSME_00021426-RA	No alias	(p40280\|h2a_maize : 125.0) Histone H2A - Zea mays...	0.04	Orthogroups_2024-Update
Pp1s72_86V6	No alias	histone h2a	0.03	Orthogroups_2024-Update
Sobic.001G416900.1	No alias	histone *(H2A)	0.03	Orthogroups_2024-Update
Solyc09g010400	No alias	Histone H2A (AHRD V3.3 *** K4CR67_SOLLC)	0.04	Orthogroups_2024-Update
Sopen01g042970	No alias	Core histone H2A/H2B/H3/H4	0.04	Orthogroups_2024-Update
Sopen10g002510	No alias	Core histone H2A/H2B/H3/H4	0.02	Orthogroups_2024-Update
Sopen11g030880	No alias	Core histone H2A/H2B/H3/H4	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	Predicted GO
MF	GO:0005102	signaling receptor binding	IEP	Predicted GO
BP	GO:0006518	peptide metabolic process	IEP	Predicted GO
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predicted GO
BP	GO:0006749	glutathione metabolic process	IEP	Predicted GO
BP	GO:0006751	glutathione catabolic process	IEP	Predicted GO
BP	GO:0006790	sulfur compound metabolic process	IEP	Predicted GO
MF	GO:0008083	growth factor activity	IEP	Predicted GO
BP	GO:0008283	cell proliferation	IEP	Predicted GO
BP	GO:0009056	catabolic process	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Predicted GO
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Predicted GO
MF	GO:0016829	lyase activity	IEP	Predicted GO
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Predicted GO
MF	GO:0016842	amidine-lyase activity	IEP	Predicted GO
MF	GO:0030545	receptor regulator activity	IEP	Predicted GO
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Predicted GO
BP	GO:0043171	peptide catabolic process	IEP	Predicted GO
BP	GO:0043603	cellular amide metabolic process	IEP	Predicted GO
BP	GO:0044248	cellular catabolic process	IEP	Predicted GO
BP	GO:0044273	sulfur compound catabolic process	IEP	Predicted GO
MF	GO:0048018	receptor ligand activity	IEP	Predicted GO
BP	GO:0051186	cofactor metabolic process	IEP	Predicted GO
BP	GO:0051187	cofactor catabolic process	IEP	Predicted GO
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predicted GO
BP	GO:1901575	organic substance catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	18	96
IPR032454	Histone_H2A_C	99	131

External Links

No external refs found!

PSME_00040346-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation