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  5. PSME_00040350-RA

PSME_00040350-RA


Description : (at5g06700 : 263.0) Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). A tbr mutant is impaired in its ability to deposit secondary wall cellulose in specific cell types, most notably in trichomes.; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plant-type cell wall modification, pectin biosynthetic process, cellulose biosynthetic process, secondary cell wall biogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G12060.1); Has 18773 Blast hits to 6666 proteins in 584 species: Archae - 22; Bacteria - 3086; Metazoa - 4181; Fungi - 2776; Plants - 1414; Viruses - 506; Other Eukaryotes - 6788 (source: NCBI BLink). & (reliability: 526.0) & (original description: no original description)


Gene families : OG_42_0000293 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000293_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00040350-RA
Cluster HCCA clusters: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
A4A49_06264 No alias protein trichome birefringence 0.03 Orthogroups_2024-Update
A4A49_19062 No alias protein trichome birefringence-like 10 0.02 Orthogroups_2024-Update
At1g60790 No alias Protein trichome birefringence-like 2... 0.03 Orthogroups_2024-Update
Bradi5g15190 No alias Plant protein of unknown function (DUF828) 0.02 Orthogroups_2024-Update
Brara.C03373.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.E02920.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.09G109600 No alias Plant protein of unknown function (DUF828) 0.03 Orthogroups_2024-Update
Glyma.10G076000 No alias TRICHOME BIREFRINGENCE-LIKE 8 0.03 Orthogroups_2024-Update
Glyma.17G016100 No alias TRICHOME BIREFRINGENCE-LIKE 11 0.03 Orthogroups_2024-Update
HORVU1Hr1G007630.1 No alias rhamnogalacturonan-I O-acetyltransferase *(TBL) 0.02 Orthogroups_2024-Update
LOC_Os04g42900 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os12g05080 No alias PMR5, putative, expressed 0.02 Orthogroups_2024-Update
MA_10436441g0010 No alias (at3g12060 : 362.0) Encodes a member of the TBL... 0.03 Orthogroups_2024-Update
PSME_00020911-RA No alias (at5g06700 : 355.0) Encodes a member of the TBL... 0.04 Orthogroups_2024-Update
PSME_00039588-RA No alias (at5g19160 : 474.0) Encodes a member of the TBL... 0.03 Orthogroups_2024-Update
Potri.001G010900 No alias Plant protein of unknown function (DUF828) 0.02 Orthogroups_2024-Update
Potri.002G054400 No alias Plant protein of unknown function (DUF828) 0.02 Orthogroups_2024-Update
Potri.006G193900 No alias Plant protein of unknown function (DUF828) 0.03 Orthogroups_2024-Update
Pp1s309_78V6 No alias af361591_1 at5g06230 mbl20_11 0.02 Orthogroups_2024-Update
Sobic.006G141400.1 No alias polysaccharide O-acetyltransferase *(TBR) 0.03 Orthogroups_2024-Update
Sobic.010G078300.1 No alias polysaccharide O-acetyltransferase *(TBR) 0.02 Orthogroups_2024-Update
Solyc01g016380 No alias Protein trichome birefringence (AHRD V3.3 *-* A0A199UZS9_ANACO) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR025846 PMR5_N_dom 198 250
IPR026057 PC-Esterase 377 477
IPR026057 PC-Esterase 251 371
No external refs found!