PSME_00040368-RA

Description : (at4g17610 : 160.0) tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 6630 Blast hits to 6614 proteins in 1865 species: Archae - 7; Bacteria - 4787; Metazoa - 103; Fungi - 50; Plants - 109; Viruses - 0; Other Eukaryotes - 1574 (source: NCBI BLink). & (reliability: 320.0) & (original description: no original description)

Gene families : OG_42_0002741 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002741_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00040368-RA
Cluster	HCCA clusters: Cluster_119

Target	Alias	Description	ECC score	Gene Family Method
PSME_00014152-RA	No alias	(at4g17610 : 154.0) tRNA/rRNA methyltransferase (SpoU)...	0.02	Orthogroups_2024-Update
PSME_00027971-RA	No alias	(at4g17610 : 254.0) tRNA/rRNA methyltransferase (SpoU)...	0.02	Orthogroups_2024-Update
PSME_00034996-RA	No alias	(at4g17610 : 139.0) tRNA/rRNA methyltransferase (SpoU)...	0.04	Orthogroups_2024-Update
PSME_00035800-RA	No alias	(at4g17610 : 163.0) tRNA/rRNA methyltransferase (SpoU)...	0.01	Orthogroups_2024-Update
PSME_00039184-RA	No alias	(at4g17610 : 161.0) tRNA/rRNA methyltransferase (SpoU)...	0.04	Orthogroups_2024-Update
PSME_00053381-RA	No alias	(at4g17610 : 158.0) tRNA/rRNA methyltransferase (SpoU)...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000776	kinetochore	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
CC	GO:0031262	Ndc80 complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001537	SpoU_MeTrfase	53	140

External Links

No external refs found!

PSME_00040368-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation