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  5. PSME_00040454-RA

PSME_00040454-RA


Description : (at4g04885 : 238.0) Encodes PCFS4 (Pcf11p-similar protein 4), a homolog of yeast polyadenylation factor Protein 1 of Cleavage Factor (Pcf11p). Regulates FCA (AT4G16280) mRNA polyadenylation. Promotes flowering time.; PCF11P-similar protein 4 (PCFS4); FUNCTIONS IN: zinc ion binding; INVOLVED IN: positive regulation of flower development, mRNA polyadenylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: shoot apical meristem, sepal, gynoecium, stamen, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: Pre-mRNA cleavage complex II (TAIR:AT1G66500.1); Has 656 Blast hits to 406 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 208; Fungi - 279; Plants - 120; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). & (reliability: 476.0) & (original description: no original description)


Gene families : OG_42_0001726 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001726_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00040454-RA
Cluster HCCA clusters: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
At2g36480 No alias ENTH/VHS family protein [Source:TAIR;Acc:AT2G36480] 0.03 Orthogroups_2024-Update
Bradi3g15320 No alias PCF11P-similar protein 4 0.03 Orthogroups_2024-Update
Bradi4g38387 No alias ENTH/VHS family protein 0.05 Orthogroups_2024-Update
Glyma.03G191200 No alias ENTH/VHS family protein 0.05 Orthogroups_2024-Update
Glyma.10G066300 No alias ENTH/VHS family protein 0.03 Orthogroups_2024-Update
Glyma.10G251100 No alias PCF11P-similar protein 4 0.05 Orthogroups_2024-Update
Glyma.19G191800 No alias ENTH/VHS family protein 0.06 Orthogroups_2024-Update
Glyma.19G191900 No alias ENTH/VHS family protein 0.04 Orthogroups_2024-Update
MA_132868g0010 No alias (at4g04885 : 206.0) Encodes PCFS4 (Pcf11p-similar... 0.05 Orthogroups_2024-Update
Mp8g18940.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.03 Orthogroups_2024-Update
Pp1s341_36V6 No alias zinc finger (c2h2-type) family protein 0.01 Orthogroups_2024-Update
Seita.2G131900.1 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm) complex 0.04 Orthogroups_2024-Update
Seita.6G039800.1 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm) complex 0.01 Orthogroups_2024-Update
Sobic.007G065400.1 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm) complex 0.03 Orthogroups_2024-Update
evm.model.tig00000396.26 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
InterPro domains Description Start Stop
IPR006903 RNA_pol_II-bd 168 220
No external refs found!