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- PSME_00040580-RA
PSME_00040580-RA
Description : (at3g53230 : 316.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 304.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 632.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type | Description | Actions |
Neighborhood | Pseudotsuga release: PSME_00040580-RA | |
Cluster | HCCA clusters: Cluster_361 | |
Functional Annotation
Type | GO Term | Name | Evidence | Source |
MF | GO:0000166 | nucleotide binding | None | Extended |
MF | GO:0003674 | molecular_function | None | Extended |
MF | GO:0005488 | binding | None | Extended |
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
MF | GO:0008144 | drug binding | None | Extended |
MF | GO:0017076 | purine nucleotide binding | None | Extended |
MF | GO:0030554 | adenyl nucleotide binding | None | Extended |
MF | GO:0032553 | ribonucleotide binding | None | Extended |
MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
MF | GO:0032559 | adenyl ribonucleotide binding | None | Extended |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
MF | GO:0036094 | small molecule binding | None | Extended |
MF | GO:0043167 | ion binding | None | Extended |
MF | GO:0043168 | anion binding | None | Extended |
MF | GO:0097159 | organic cyclic compound binding | None | Extended |
MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
MF | GO:1901363 | heterocyclic compound binding | None | Extended |
Type | GO Term | Name | Evidence | Source |
CC | GO:0000776 | kinetochore | IEP | Predicted GO |
MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
MF | GO:0004014 | adenosylmethionine decarboxylase activity | IEP | Predicted GO |
BP | GO:0006091 | generation of precursor metabolites and energy | IEP | Predicted GO |
BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
BP | GO:0006595 | polyamine metabolic process | IEP | Predicted GO |
BP | GO:0006596 | polyamine biosynthetic process | IEP | Predicted GO |
BP | GO:0006597 | spermine biosynthetic process | IEP | Predicted GO |
BP | GO:0008215 | spermine metabolic process | IEP | Predicted GO |
BP | GO:0008216 | spermidine metabolic process | IEP | Predicted GO |
BP | GO:0008295 | spermidine biosynthetic process | IEP | Predicted GO |
BP | GO:0009309 | amine biosynthetic process | IEP | Predicted GO |
CC | GO:0009521 | photosystem | IEP | Predicted GO |
BP | GO:0009767 | photosynthetic electron transport chain | IEP | Predicted GO |
MF | GO:0016168 | chlorophyll binding | IEP | Predicted GO |
BP | GO:0019684 | photosynthesis, light reaction | IEP | Predicted GO |
BP | GO:0022900 | electron transport chain | IEP | Predicted GO |
CC | GO:0031262 | Ndc80 complex | IEP | Predicted GO |
CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
BP | GO:0042401 | cellular biogenic amine biosynthetic process | IEP | Predicted GO |
BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044425 | membrane part | IEP | Predicted GO |
CC | GO:0044436 | thylakoid part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
MF | GO:0046906 | tetrapyrrole binding | IEP | Predicted GO |
MF | GO:0046983 | protein dimerization activity | IEP | Predicted GO |
MF | GO:0051920 | peroxiredoxin activity | IEP | Predicted GO |
BP | GO:0097164 | ammonium ion metabolic process | IEP | Predicted GO |
CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
IPR015415 | Vps4_C | 269 | 309 |
IPR003959 | ATPase_AAA_core | 141 | 197 |