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  5. PSME_00040596-RA

PSME_00040596-RA


Description : (at2g31160 : 184.0) LIGHT SENSITIVE HYPOCOTYLS 3 (LSH3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 342.0) & (original description: no original description)


Gene families : OG_42_0000294 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00040596-RA
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
Brara.B02853.1 No alias plant-specific ALOG-type transcription factor 0.05 Orthogroups_2024-Update
Brara.C02165.1 No alias plant-specific ALOG-type transcription factor 0.02 Orthogroups_2024-Update
Brara.C03056.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.D01881.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E01235.1 No alias plant-specific ALOG-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.10G037600 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
Glyma.12G229500 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
LOC_Os05g28040 No alias DUF640 domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.004G057300 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
Sobic.009G170100.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Sopen02g018650 No alias Protein of unknown function (DUF640) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006936 ALOG_dom 27 146
No external refs found!