PSME_00040633-RA

Description : (q40682|ef1d2_orysa : 94.4) Elongation factor 1-delta 2 (EF-1-delta 2) (Elongation factor 1B-beta 2) (eEF-1B beta 2) - Oryza sativa (Rice) & (at2g18110 : 94.0) Translation elongation factor EF1B/ribosomal protein S6 family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: eukaryotic translation elongation factor 1 complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange (InterPro:IPR014038), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (TAIR:AT1G30230.1); Has 1014 Blast hits to 1012 proteins in 273 species: Archae - 0; Bacteria - 6; Metazoa - 527; Fungi - 160; Plants - 164; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink). & (reliability: 188.0) & (original description: no original description)

Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00040633-RA
Cluster	HCCA clusters: Cluster_679

Target	Alias	Description	ECC score	Gene Family Method
GRMZM2G340444	No alias	RING/U-box superfamily protein	0.01	Orthogroups_2024-Update
Glyma.02G210700	No alias	RING/U-box superfamily protein	0.03	Orthogroups_2024-Update
Glyma.03G263000	No alias	RING/U-box superfamily protein	0.04	Orthogroups_2024-Update
Glyma.06G284600	No alias	RING/U-box superfamily protein	0.01	Orthogroups_2024-Update
Glyma.09G067900	No alias	RING/U-box superfamily protein	0.01	Orthogroups_2024-Update
Glyma.09G264300	No alias	RING/U-box superfamily protein	0.02	Orthogroups_2024-Update
Glyma.10G121100	No alias	RING/U-box superfamily protein	0.01	Orthogroups_2024-Update
LOC_Os06g34560	No alias	zinc finger, C3HC4 type domain containing protein, expressed	0.01	Orthogroups_2024-Update
MA_3380g0010	No alias	(at1g49230 : 140.0) RING/U-box superfamily protein;...	0.04	Orthogroups_2024-Update
MA_44828g0020	No alias	(at3g62690 : 89.0) Encodes a RING-H2 zinc finger protein...	0.01	Orthogroups_2024-Update
MA_5319g0010	No alias	(at1g49230 : 120.0) RING/U-box superfamily protein;...	0.02	Orthogroups_2024-Update
MA_634100g0010	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update
MA_6931619g0010	No alias	(at1g49230 : 106.0) RING/U-box superfamily protein;...	0.02	Orthogroups_2024-Update
PSME_00030870-RA	No alias	(at3g16720 : 99.8) RING-H2 protein induced after...	0.03	Orthogroups_2024-Update
Sobic.001G378600.1	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase	0.01	Orthogroups_2024-Update
Sobic.004G005000.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.004G057000.2	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
Sobic.009G056600.1	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase	0.02	Orthogroups_2024-Update
Solyc11g005290	No alias	RING/U-box superfamily protein (AHRD V3.3 *** AT1G49230.1)	0.03	Orthogroups_2024-Update
Sopen11g001300	No alias	Ring finger domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003746	translation elongation factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006414	translational elongation	IEA	InterProScan predictions
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	134	177
IPR014038	EF1B_bsu/dsu_GNE	257	300

External Links

No external refs found!

PSME_00040633-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation