PSME_00040668-RA

Description : (at5g02460 : 137.0) Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DNA binding with one finger 2.4 (TAIR:AT2G37590.1); Has 1212 Blast hits to 1182 proteins in 84 species: Archae - 0; Bacteria - 4; Metazoa - 69; Fungi - 10; Plants - 1097; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). & (o24463|pbf_maize : 121.0) Dof zinc finger protein PBF (Prolamin box-binding factor) - Zea mays (Maize) & (reliability: 274.0) & (original description: no original description)

Gene families : OG_42_0000027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00040668-RA
Cluster	HCCA clusters: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
A4A49_12312	No alias	dof zinc finger protein dof2.1	0.04	Orthogroups_2024-Update
A4A49_33562	No alias	dof zinc finger protein dof4.6	0.04	Orthogroups_2024-Update
A4A49_41416	No alias	dof zinc finger protein dof1.4	0.04	Orthogroups_2024-Update
At3g55370	No alias	OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]	0.03	Orthogroups_2024-Update
Bradi2g10640	No alias	cycling DOF factor 3	0.03	Orthogroups_2024-Update
Brara.D01727.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Brara.H01965.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Brara.H02152.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Brara.I00633.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Brara.I02909.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
GRMZM5G880268	No alias	OBF-binding protein 3	0.03	Orthogroups_2024-Update
Glyma.06G131500	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Orthogroups_2024-Update
Glyma.08G228900	No alias	cycling DOF factor 1	0.03	Orthogroups_2024-Update
Glyma.10G173700	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Orthogroups_2024-Update
Glyma.13G230200	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Glyma.20G216600	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
HORVU3Hr1G072970.1	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
LOC_Os01g55340	No alias	dof zinc finger domain containing protein, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os02g47810	No alias	dof zinc finger domain containing protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_175298g0010	No alias	(at5g39660 : 214.0) Dof-type zinc finger...	0.03	Orthogroups_2024-Update
MA_83624g0010	No alias	(at5g60200 : 114.0) Encodes a Dof-type transcription...	0.05	Orthogroups_2024-Update
MA_944867g0010	No alias	(at3g47500 : 129.0) Dof-type zinc finger...	0.03	Orthogroups_2024-Update
Mp2g20790.1	No alias	transcription factor (DOF)	0.04	Orthogroups_2024-Update
PSME_00004776-RA	No alias	(at5g60850 : 127.0) Encodes a zinc finger protein.; OBF...	0.03	Orthogroups_2024-Update
Potri.002G129600	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Potri.008G055100	No alias	OBF-binding protein 3	0.03	Orthogroups_2024-Update
Potri.017G084600	No alias	cycling DOF factor 2	0.02	Orthogroups_2024-Update
Pp1s341_43V6	No alias	f-box family protein	0.03	Orthogroups_2024-Update
Seita.3G371900.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Seita.5G136300.1	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
Solyc02g088070	No alias	Dof zinc finger protein (AHRD V3.3 *** W9QEV1_9ROSA)	0.02	Orthogroups_2024-Update
Solyc03g115940	No alias	Dof zinc finger protein (AHRD V3.3 *** C4B6D7_IPOBA)	0.03	Orthogroups_2024-Update
Solyc08g082910	No alias	Dof zinc finger protein (AHRD V3.3 *** W9RTF5_9ROSA)	0.03	Orthogroups_2024-Update
Sopen03g032010	No alias	Dof domain, zinc finger	0.04	Orthogroups_2024-Update
Sopen06g027770	No alias	Dof domain, zinc finger	0.05	Orthogroups_2024-Update
Sopen06g031790	No alias	Dof domain, zinc finger	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044237	cellular metabolic process	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	52	108

External Links

No external refs found!

PSME_00040668-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation