1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00040941-RA

PSME_00040941-RA


Description : (p22503|gun_phavu : 470.0) Endoglucanase precursor (EC 3.2.1.4) (Endo-1,4-beta-glucanase) (Abscission cellulase) - Phaseolus vulgaris (Kidney bean) (French bean) & (at4g23560 : 461.0) glycosyl hydrolase 9B15 (GH9B15); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B14 (TAIR:AT4G09740.1); Has 1874 Blast hits to 1863 proteins in 270 species: Archae - 2; Bacteria - 707; Metazoa - 184; Fungi - 17; Plants - 921; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). & (reliability: 922.0) & (original description: no original description)


Gene families : OG_42_0000077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00040941-RA
Cluster HCCA clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
144066 No alias glycosyl hydrolase 9B7 0.04 Orthogroups_2024-Update
A4A49_05097 No alias endoglucanase 11 0.03 Orthogroups_2024-Update
Brara.I05558.1 No alias class-B endo-1,4-beta-glucanase 0.02 Orthogroups_2024-Update
GRMZM2G143747 No alias glycosyl hydrolase 9C2 0.05 Orthogroups_2024-Update
Glyma.06G025100 No alias glycosyl hydrolase 9B7 0.02 Orthogroups_2024-Update
HORVU6Hr1G022270.6 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G073570.3 No alias class-B endo-1,4-beta-glucanase 0.05 Orthogroups_2024-Update
Kfl00013_0360 kfl00013_0360_v1.... (at4g11050 : 432.0) glycosyl hydrolase 9C3 (GH9C3);... 0.03 Orthogroups_2024-Update
LOC_Os02g50040 No alias endoglucanase, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00029775-RA No alias (at4g11050 : 498.0) glycosyl hydrolase 9C3 (GH9C3);... 0.03 Orthogroups_2024-Update
PSME_00033700-RA No alias (at4g11050 : 728.0) glycosyl hydrolase 9C3 (GH9C3);... 0.05 Orthogroups_2024-Update
Potri.001G083200 No alias cellulase 2 0.03 Orthogroups_2024-Update
Potri.002G225200 No alias glycosyl hydrolase 9B8 0.05 Orthogroups_2024-Update
Potri.003G139600 No alias glycosyl hydrolase 9C2 0.05 Orthogroups_2024-Update
Potri.014G157600 No alias glycosyl hydrolase 9B8 0.03 Orthogroups_2024-Update
Seita.2G287600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.3G050200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G022400.1 No alias class-B endo-1,4-beta-glucanase 0.04 Orthogroups_2024-Update
Sobic.002G276600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G248100.1 No alias class-B endo-1,4-beta-glucanase 0.03 Orthogroups_2024-Update
Sopen07g024630 No alias Glycosyl hydrolase family 9 0.03 Orthogroups_2024-Update
Sopen08g031400 No alias Glycosyl hydrolase family 9 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:1902600 proton transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 34 72
IPR001701 Glyco_hydro_9 74 411
No external refs found!