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  5. PSME_00041119-RA

PSME_00041119-RA


Description : (at5g67420 : 212.0) LOB domain-containing protein 37 (LBD37); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 38 (TAIR:AT3G49940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 424.0) & (original description: no original description)


Gene families : OG_42_0000544 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000544_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041119-RA
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
At3g02550 No alias LOB domain-containing protein 41... 0.05 Orthogroups_2024-Update
At5g67420 No alias LOB domain-containing protein 37... 0.02 Orthogroups_2024-Update
Brara.I00847.1 No alias AS2/LOB-type transcription factor 0.04 Orthogroups_2024-Update
Glyma.01G192600 No alias LOB domain-containing protein 38 0.06 Orthogroups_2024-Update
Glyma.07G091600 No alias LOB domain-containing protein 41 0.05 Orthogroups_2024-Update
Glyma.20G133000 No alias LOB domain-containing protein 38 0.03 Orthogroups_2024-Update
MA_122595g0010 No alias (at3g49940 : 211.0) LOB domain-containing protein 38... 0.05 Orthogroups_2024-Update
MA_19934g0010 No alias (at1g67100 : 194.0) LOB domain-containing protein 40... 0.03 Orthogroups_2024-Update
MA_55585g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_75731g0010 No alias (at1g67100 : 186.0) LOB domain-containing protein 40... 0.04 Orthogroups_2024-Update
PSME_00021971-RA No alias (at1g67100 : 181.0) LOB domain-containing protein 40... 0.04 Orthogroups_2024-Update
Potri.012G056800 No alias LOB domain-containing protein 41 0.03 Orthogroups_2024-Update
Potri.014G017400 No alias LOB domain-containing protein 38 0.03 Orthogroups_2024-Update
Pp1s167_34V6 No alias LOB domain protein 37 [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Seita.3G120000.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Seita.9G356100.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.001G169200.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Solyc04g077990 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc05g009320 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 31 130
No external refs found!