PSME_00041154-RA

Description : (at3g54420 : 236.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (p29022|chia_maize : 222.0) Endochitinase A precursor (EC 3.2.1.14) (Seed chitinase A) - Zea mays (Maize) & (reliability: 472.0) & (original description: no original description)

Gene families : OG_42_0000525 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000525_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00041154-RA
Cluster	HCCA clusters: Cluster_94

Target	Alias	Description	ECC score	Gene Family Method
A4A49_35699	No alias	endochitinase ep3	0.03	Orthogroups_2024-Update
Glyma.13G346700	No alias	homolog of carrot EP3-3 chitinase	0.03	Orthogroups_2024-Update
MA_10430424g0010	No alias	(p29022\|chia_maize : 207.0) Endochitinase A precursor...	0.04	Orthogroups_2024-Update
Mp5g02050.1	No alias	Endochitinase 1 OS=Gossypium hirsutum...	0.03	Orthogroups_2024-Update
PSME_00018393-RA	No alias	(at3g54420 : 241.0) encodes an EP3 chitinase that is...	0.06	Orthogroups_2024-Update
PSME_00030535-RA	No alias	(at3g54420 : 248.0) encodes an EP3 chitinase that is...	0.05	Orthogroups_2024-Update
PSME_00036435-RA	No alias	(at3g54420 : 251.0) encodes an EP3 chitinase that is...	0.03	Orthogroups_2024-Update
PSME_00036436-RA	No alias	(at3g54420 : 249.0) encodes an EP3 chitinase that is...	0.07	Orthogroups_2024-Update
PSME_00037516-RA	No alias	(at3g54420 : 211.0) encodes an EP3 chitinase that is...	0.07	Orthogroups_2024-Update
PSME_00037636-RA	No alias	(p29022\|chia_maize : 228.0) Endochitinase A precursor...	0.04	Orthogroups_2024-Update
PSME_00039570-RA	No alias	(p29023\|chib_maize : 253.0) Endochitinase B precursor...	0.03	Orthogroups_2024-Update
PSME_00047416-RA	No alias	(p29022\|chia_maize : 241.0) Endochitinase A precursor...	0.08	Orthogroups_2024-Update
PSME_00050767-RA	No alias	(p29022\|chia_maize : 240.0) Endochitinase A precursor...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004568	chitinase activity	IEA	InterProScan predictions
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006030	chitin metabolic process	None	Extended
BP	GO:0006032	chitin catabolic process	IEA	InterProScan predictions
BP	GO:0006040	amino sugar metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	IEA	InterProScan predictions
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0042737	drug catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046348	amino sugar catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901071	glucosamine-containing compound metabolic process	None	Extended
BP	GO:1901072	glucosamine-containing compound catabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015696	ammonium transport	IEP	Predicted GO
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Predicted GO
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Predicted GO
MF	GO:0045735	nutrient reservoir activity	IEP	Predicted GO
MF	GO:0051213	dioxygenase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000726	Glyco_hydro_19_cat	33	238

External Links

No external refs found!

PSME_00041154-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation