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  5. PSME_00041194-RA

PSME_00041194-RA


Description : (at1g23210 : 550.0) glycosyl hydrolase 9B6 (GH9B6); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B1 (TAIR:AT1G70710.1); Has 1742 Blast hits to 1728 proteins in 256 species: Archae - 2; Bacteria - 580; Metazoa - 187; Fungi - 17; Plants - 918; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). & (q652f9|gun17_orysa : 540.0) Endoglucanase 17 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 17) (OsGLU13) - Oryza sativa (Rice) & (reliability: 1100.0) & (original description: no original description)


Gene families : OG_42_0000077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041194-RA
Cluster HCCA clusters: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G151257 No alias glycosyl hydrolase 9B8 0.03 Orthogroups_2024-Update
MA_195523g0010 No alias (at3g43860 : 298.0) glycosyl hydrolase 9A4 (GH9A4);... 0.03 Orthogroups_2024-Update
PSME_00001650-RA No alias (at4g11050 : 540.0) glycosyl hydrolase 9C3 (GH9C3);... 0.05 Orthogroups_2024-Update
PSME_00006676-RA No alias (at4g02290 : 363.0) glycosyl hydrolase 9B13 (GH9B13);... 0.01 Orthogroups_2024-Update
PSME_00016234-RA No alias (at1g70710 : 674.0) endo-1,4-beta-glucanase. Involved in... 0.04 Orthogroups_2024-Update
PSME_00024924-RA No alias (at4g02290 : 664.0) glycosyl hydrolase 9B13 (GH9B13);... 0.04 Orthogroups_2024-Update
PSME_00025737-RA No alias (at4g11050 : 499.0) glycosyl hydrolase 9C3 (GH9C3);... 0.05 Orthogroups_2024-Update
PSME_00027441-RA No alias (at4g11050 : 477.0) glycosyl hydrolase 9C3 (GH9C3);... 0.05 Orthogroups_2024-Update
PSME_00029775-RA No alias (at4g11050 : 498.0) glycosyl hydrolase 9C3 (GH9C3);... 0.04 Orthogroups_2024-Update
PSME_00042047-RA No alias (at1g02800 : 369.0) Encodes a protein with similarity to... 0.04 Orthogroups_2024-Update
Potri.019G069300 No alias cellulase 3 0.03 Orthogroups_2024-Update
Pp1s100_137V6 No alias endo- -beta- 0.02 Orthogroups_2024-Update
Solyc04g081300 No alias Endoglucanase (AHRD V3.3 *** K4BVK9_SOLLC) 0.02 Orthogroups_2024-Update
Sopen09g004950 No alias Glycosyl hydrolase family 9 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 302 442
IPR001701 Glyco_hydro_9 39 299
No external refs found!