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  5. PSME_00041300-RA

PSME_00041300-RA


Description : (at5g65560 : 628.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G77340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 352.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1256.0) & (original description: no original description)


Gene families : OG_42_0001457 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041300-RA
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Glyma.01G021450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
MA_103970g0010 No alias (at5g65560 : 558.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_10425907g0010 No alias (at3g22470 : 354.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_10429462g0020 No alias (at1g12775 : 293.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00021435-RA No alias (at5g65560 : 616.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00055249-RA No alias (at3g07290 : 104.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Seita.5G077300.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 318 367
IPR002885 Pentatricopeptide_repeat 738 784
IPR002885 Pentatricopeptide_repeat 396 437
IPR002885 Pentatricopeptide_repeat 458 507
IPR002885 Pentatricopeptide_repeat 668 717
IPR002885 Pentatricopeptide_repeat 823 857
IPR002885 Pentatricopeptide_repeat 914 960
IPR002885 Pentatricopeptide_repeat 528 577
IPR002885 Pentatricopeptide_repeat 598 647
IPR002885 Pentatricopeptide_repeat 882 910
IPR002885 Pentatricopeptide_repeat 220 246
IPR002885 Pentatricopeptide_repeat 279 311
No external refs found!