PSME_00041310-RA

Description : (at1g75490 : 82.8) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.; Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G18450.1); Has 5736 Blast hits to 5602 proteins in 247 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5714; Viruses - 6; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 165.6) & (original description: no original description)

Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00041310-RA
Cluster	HCCA clusters: Cluster_119

Target	Alias	Description	ECC score	Gene Family Method
A4A49_06467	No alias	ethylene-responsive transcription factor crf4	0.02	Orthogroups_2024-Update
A4A49_24642	No alias	ethylene-responsive transcription factor rap2-11	0.03	Orthogroups_2024-Update
A4A49_35180	No alias	ethylene-responsive transcription factor 1b	0.03	Orthogroups_2024-Update
A4A49_42088	No alias	ethylene-responsive transcription factor 13	0.03	Orthogroups_2024-Update
A4A49_42272	No alias	ethylene-responsive transcription factor 4	0.02	Orthogroups_2024-Update
A4A49_42290	No alias	ethylene-responsive transcription factor rap2-4	0.03	Orthogroups_2024-Update
Bradi1g54450	No alias	related to AP2 11	0.05	Orthogroups_2024-Update
Bradi1g72449	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Brara.H00930.1	No alias	subgroup ERF-IX transcription factor	0.03	Orthogroups_2024-Update
Brara.K00042.1	No alias	subgroup ERF-I transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G174917	No alias	DREB and EAR motif protein 3	0.02	Orthogroups_2024-Update
GRMZM2G466044	No alias	ethylene responsive element binding factor 1	0.02	Orthogroups_2024-Update
Glyma.02G066200	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.02G261700	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Glyma.03G111700	No alias	ethylene-responsive element binding factor 13	0.04	Orthogroups_2024-Update
Glyma.03G162700	No alias	ethylene-responsive element binding factor 15	0.03	Orthogroups_2024-Update
Glyma.07G044300	No alias	related to AP2 12	0.02	Orthogroups_2024-Update
Glyma.13G040400	No alias	cytokinin response factor 4	0.03	Orthogroups_2024-Update
Glyma.16G012600	No alias	related to AP2 2	0.03	Orthogroups_2024-Update
Glyma.19G164100	No alias	ethylene response factor 1	0.03	Orthogroups_2024-Update
LOC_Os05g29810	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
MA_10431882g0010	No alias	(at1g19210 : 119.0) encodes a member of the DREB...	0.04	Orthogroups_2024-Update
MA_13408g0010	No alias	(at1g21910 : 95.9) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
MA_4032g0010	No alias	(q9sxs8\|erf3_tobac : 85.1) Ethylene-responsive...	0.05	Orthogroups_2024-Update
MA_88g0020	No alias	(at1g74930 : 118.0) encodes a member of the DREB...	0.04	Orthogroups_2024-Update
MA_97319g0010	No alias	(at3g16280 : 127.0) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
MA_9785986g0010	No alias	(at5g21960 : 130.0) encodes a member of the DREB...	0.04	Orthogroups_2024-Update
PSME_00008891-RA	No alias	(at4g17500 : 93.6) Encodes a member of the ERF (ethylene...	0.04	Orthogroups_2024-Update
PSME_00008897-RA	No alias	(at4g17500 : 88.2) Encodes a member of the ERF (ethylene...	0.04	Orthogroups_2024-Update
PSME_00033961-RA	No alias	(at5g21960 : 122.0) encodes a member of the DREB...	0.05	Orthogroups_2024-Update
PSME_00052064-RA	No alias	(at5g21960 : 132.0) encodes a member of the DREB...	0.05	Orthogroups_2024-Update
PSME_00056380-RA	No alias	(at4g17500 : 89.7) Encodes a member of the ERF (ethylene...	0.03	Orthogroups_2024-Update
Potri.001G110700	No alias	C-repeat-binding factor 4	0.03	Orthogroups_2024-Update
Potri.003G220200	No alias	related to AP2 11	0.02	Orthogroups_2024-Update
Potri.017G055400	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Potri.018G085700	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Seita.2G215500.1	No alias	subgroup ERF-VII transcription factor & transcription...	0.02	Orthogroups_2024-Update
Sobic.002G139400.1	No alias	subgroup ERF-IX transcription factor	0.04	Orthogroups_2024-Update
Sobic.006G168000.1	No alias	subgroup ERF-IX transcription factor	0.03	Orthogroups_2024-Update
Sobic.009G184300.1	No alias	subgroup ERF-VIII transcription factor	0.03	Orthogroups_2024-Update
Solyc08g078190	No alias	ethylene-responsive transcription factor	0.03	Orthogroups_2024-Update
Sopen04g022770	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen05g030600	No alias	AP2 domain	0.02	Orthogroups_2024-Update
Sopen12g004190	No alias	AP2 domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Predicted GO
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0010333	terpene synthase activity	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
MF	GO:0016829	lyase activity	IEP	Predicted GO
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predicted GO
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	24	73

External Links

No external refs found!

PSME_00041310-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation