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  5. PSME_00041351-RA

PSME_00041351-RA


Description : (at1g70080 : 113.0) Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14520.1); Has 1724 Blast hits to 1694 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1720; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (p59287|cass_ricco : 107.0) Casbene synthase, chloroplast precursor (EC 4.2.3.8) - Ricinus communis (Castor bean) & (reliability: 226.0) & (original description: no original description)


Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041351-RA
Cluster HCCA clusters: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
407280 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.03 Orthogroups_2024-Update
412139 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g08220 No alias terpene synthase 10 0.03 Orthogroups_2024-Update
Glyma.13G321100 No alias terpene synthase 03 0.03 Orthogroups_2024-Update
MA_10025722g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_10426551g0010 No alias (p59287|cass_ricco : 248.0) Casbene synthase,... 0.03 Orthogroups_2024-Update
MA_17608g0020 No alias (at4g16740 : 180.0) Encodes an (E,E)-alpha-farnesene... 0.06 Orthogroups_2024-Update
MA_1830g0010 No alias (p59287|cass_ricco : 269.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
MA_343069g0010 No alias (o04408|ksa_pea : 131.0) Ent-kaurene synthase A,... 0.04 Orthogroups_2024-Update
PSME_00003263-RA No alias (at4g02780 : 383.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
PSME_00003264-RA No alias (at4g02780 : 395.0) Catalyzes the conversion of... 0.05 Orthogroups_2024-Update
PSME_00003483-RA No alias (p93665|dcs1_goshi : 253.0) (+)-delta-cadinene synthase... 0.08 Orthogroups_2024-Update
PSME_00004615-RA No alias (at4g02780 : 383.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
PSME_00010280-RA No alias (at4g02780 : 395.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
PSME_00017294-RA No alias (at4g02780 : 138.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
PSME_00018711-RA No alias (p93665|dcs1_goshi : 196.0) (+)-delta-cadinene synthase... 0.04 Orthogroups_2024-Update
PSME_00023685-RA No alias (p59287|cass_ricco : 257.0) Casbene synthase,... 0.06 Orthogroups_2024-Update
PSME_00025006-RA No alias (at4g16730 : 150.0) In the Col ecotype, no functional... 0.04 Orthogroups_2024-Update
PSME_00027421-RA No alias (o04408|ksa_pea : 118.0) Ent-kaurene synthase A,... 0.04 Orthogroups_2024-Update
PSME_00030201-RA No alias (at4g02780 : 365.0) Catalyzes the conversion of... 0.06 Orthogroups_2024-Update
PSME_00034701-RA No alias (p59287|cass_ricco : 249.0) Casbene synthase,... 0.06 Orthogroups_2024-Update
Sobic.006G027500.2 No alias EC_4.2 carbon-oxygen lyase &... 0.04 Orthogroups_2024-Update
Solyc01g105850 No alias (E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN)%3B... 0.02 Orthogroups_2024-Update
Solyc01g105860 No alias (R)-limonene synthase (AHRD V1 ***- B9T537_RICCO)%3B... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan predictions
MF GO:0010333 terpene synthase activity IEA InterProScan predictions
MF GO:0016829 lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR001906 Terpene_synth_N 34 154
IPR005630 Terpene_synthase_metal-bd 181 348
No external refs found!