1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00041406-RA

PSME_00041406-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041406-RA
Cluster HCCA clusters: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
A4A49_19670 No alias squamosa promoter-binding-like protein 6 0.02 Orthogroups_2024-Update
Bradi3g40030 No alias squamosa promoter binding protein-like 9 0.03 Orthogroups_2024-Update
Brara.F03810.1 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
Brara.H02059.1 No alias SBP-type transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G111136 No alias squamosa promoter binding protein-like 8 0.02 Orthogroups_2024-Update
HORVU5Hr1G073440.13 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
MA_3179g0020 No alias (at1g02065 : 176.0) Encodes an SBP-box gene, a member of... 0.03 Orthogroups_2024-Update
PSME_00053503-RA No alias (at1g02065 : 156.0) Encodes an SBP-box gene, a member of... 0.06 Orthogroups_2024-Update
Potri.015G098900 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.04 Orthogroups_2024-Update
Potri.016G048500 No alias squamosa promoter binding protein-like 9 0.03 Orthogroups_2024-Update
Solyc05g012040 No alias Squamosa promoter binding protein 6b 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:1902600 proton transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 47 70
No external refs found!