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  5. PSME_00041420-RA

PSME_00041420-RA


Description : (at5g40490 : 199.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G13224.2); Has 237026 Blast hits to 70789 proteins in 2918 species: Archae - 339; Bacteria - 59623; Metazoa - 97059; Fungi - 16957; Plants - 23804; Viruses - 2447; Other Eukaryotes - 36797 (source: NCBI BLink). & (p28644|roc1_spiol : 88.6) 28 kDa ribonucleoprotein, chloroplast (28RNP) - Spinacia oleracea (Spinach) & (reliability: 398.0) & (original description: no original description)


Gene families : OG_42_0000197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041420-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
172407 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
A4A49_34905 No alias heterogeneous nuclear ribonucleoprotein 1 0.03 Orthogroups_2024-Update
At1g17640 No alias RNA-binding (RRM/RBD/RNP motifs) family protein... 0.03 Orthogroups_2024-Update
At4g26650 No alias AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569] 0.03 Orthogroups_2024-Update
Bradi3g28430 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Glyma.19G061100 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Orthogroups_2024-Update
MA_36839g0020 No alias (at3g07810 : 140.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
Potri.003G040900 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Orthogroups_2024-Update
Sobic.010G171100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc09g090520 No alias RNA-binding protein-like (AHRD V3.3 *-* Q8L779_ARATH) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 50 116
IPR000504 RRM_dom 168 237
No external refs found!