PSME_00041459-RA

Description : (at5g36930 : 241.0) Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 482.0) & (original description: no original description)

Gene families : OG_42_0000010 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00041459-RA
Cluster	HCCA clusters: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
A4A49_16559	No alias	tmv resistance protein n	0.02	Orthogroups_2024-Update
A4A49_22883	No alias	tmv resistance protein n	0.02	Orthogroups_2024-Update
A4A49_22884	No alias	tmv resistance protein n	0.01	Orthogroups_2024-Update
At1g63870	No alias	Disease resistance protein (TIR-NBS-LRR class) family...	0.03	Orthogroups_2024-Update
At1g72890	No alias	Disease resistance protein (TIR-NBS class)...	0.02	Orthogroups_2024-Update
At5g46510	No alias	Disease resistance protein (TIR-NBS-LRR class) family...	0.03	Orthogroups_2024-Update
At5g48770	No alias	Disease resistance protein [Source:UniProtKB/TrEMBL;Acc:Q9FKB9]	0.03	Orthogroups_2024-Update
Brara.B00725.1	No alias	effector receptor *(NLR)	0.03	Orthogroups_2024-Update
Glyma.03G047900	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.02	Orthogroups_2024-Update
Glyma.06G265400	No alias	disease resistance protein (TIR-NBS-LRR class), putative	0.02	Orthogroups_2024-Update
Glyma.12G132400	No alias	disease resistance protein (TIR-NBS-LRR class), putative	0.04	Orthogroups_2024-Update
Glyma.16G127900	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.02	Orthogroups_2024-Update
LOC_Os11g38000	No alias	NB-ARC domain containing protein, expressed	0.02	Orthogroups_2024-Update
PSME_00043800-RA	No alias	(at5g36930 : 119.0) Disease resistance protein...	0.04	Orthogroups_2024-Update
Potri.001G066500	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
BP	GO:0007165	signal transduction	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Predicted GO
MF	GO:0004425	indole-3-glycerol-phosphate synthase activity	IEP	Predicted GO
MF	GO:0004673	protein histidine kinase activity	IEP	Predicted GO
BP	GO:0009314	response to radiation	IEP	Predicted GO
BP	GO:0009416	response to light stimulus	IEP	Predicted GO
BP	GO:0009581	detection of external stimulus	IEP	Predicted GO
BP	GO:0009582	detection of abiotic stimulus	IEP	Predicted GO
BP	GO:0009583	detection of light stimulus	IEP	Predicted GO
BP	GO:0009584	detection of visible light	IEP	Predicted GO
BP	GO:0009605	response to external stimulus	IEP	Predicted GO
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Predicted GO
BP	GO:0018298	protein-chromophore linkage	IEP	Predicted GO
BP	GO:0051606	detection of stimulus	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	204	405
IPR000157	TIR_dom	10	171

External Links

No external refs found!

PSME_00041459-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation