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  5. PSME_00041592-RA

PSME_00041592-RA


Description : (at2g40030 : 126.0) Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing.; nuclear RNA polymerase D1B (NRPD1B); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3223 (InterPro:IPR021602), RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase D1A (TAIR:AT1G63020.2); Has 52919 Blast hits to 31940 proteins in 6835 species: Archae - 366; Bacteria - 10380; Metazoa - 13235; Fungi - 6920; Plants - 7147; Viruses - 757; Other Eukaryotes - 14114 (source: NCBI BLink). & (reliability: 248.0) & (original description: no original description)


Gene families : OG_42_0003560 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003560_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041592-RA
Cluster HCCA clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Mp3g10010.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!