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  5. Sopen06g009840

Sopen06g009840


Description : gag-polypeptide of LTR copia-type


Gene families : OG_42_0001591 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001591_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g009840
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
Sopen01g009760 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g022060 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.06 Orthogroups_2024-Update
Sopen01g029550 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g025540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen05g009310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g022560 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g012070 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen11g019730 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 187 203
No external refs found!