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  5. PSME_00041762-RA

PSME_00041762-RA


Description : (at4g32600 : 284.0) zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G80400.1); Has 7180 Blast hits to 7160 proteins in 223 species: Archae - 0; Bacteria - 6; Metazoa - 2398; Fungi - 545; Plants - 2870; Viruses - 33; Other Eukaryotes - 1328 (source: NCBI BLink). & (reliability: 568.0) & (original description: no original description)


Gene families : OG_42_0000431 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000431_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041762-RA
Cluster HCCA clusters: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
Brara.F03459.1 No alias E3 ubiquitin ligase *(RIE1) 0.04 Orthogroups_2024-Update
Glyma.03G120200 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.06 Orthogroups_2024-Update
Glyma.09G265600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G361000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G012900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Kfl00003_0180 kfl00003_0180_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os01g08340 No alias zinc finger family protein, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g06960.1 No alias RING-H2-class E3 ligase 0.02 Orthogroups_2024-Update
Potri.010G106300 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.03 Orthogroups_2024-Update
Seita.1G311700.1 No alias E3 ubiquitin ligase *(RIE1) 0.03 Orthogroups_2024-Update
Solyc12g006940 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061G9Z9_THECC) 0.03 Orthogroups_2024-Update
Sopen05g029490 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen08g021680 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003883 CTP synthase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 432 474
No external refs found!