1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00041780-RA

PSME_00041780-RA


Description : (at4g38620 : 265.0) Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2.; myb domain protein 4 (MYB4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 32 (TAIR:AT4G34990.1); Has 9208 Blast hits to 8453 proteins in 515 species: Archae - 0; Bacteria - 0; Metazoa - 855; Fungi - 510; Plants - 6018; Viruses - 3; Other Eukaryotes - 1822 (source: NCBI BLink). & (p20026|myb1_horvu : 258.0) Myb-related protein Hv1 - Hordeum vulgare (Barley) & (reliability: 530.0) & (original description: no original description)


Gene families : OG_42_0000002 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041780-RA
Cluster HCCA clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
93784 No alias myb domain protein 97 0.02 Orthogroups_2024-Update
A4A49_24839 No alias transcription factor gamyb 0.03 Orthogroups_2024-Update
A4A49_34201 No alias transcription factor myb82 0.02 Orthogroups_2024-Update
A4A49_35836 No alias transcription factor myb30 0.03 Orthogroups_2024-Update
A4A49_41919 No alias myb-related protein myb4 0.04 Orthogroups_2024-Update
At1g34670 No alias Transcription factor MYB93... 0.03 Orthogroups_2024-Update
At3g11440 No alias Transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A178VKX5] 0.03 Orthogroups_2024-Update
At4g26930 No alias Transcription factor MYB97... 0.03 Orthogroups_2024-Update
At5g14750 No alias WER1 [Source:UniProtKB/TrEMBL;Acc:A0A178UJM1] 0.03 Orthogroups_2024-Update
At5g16770 No alias Myb domain protein 9 [Source:UniProtKB/TrEMBL;Acc:F4KE69] 0.04 Orthogroups_2024-Update
At5g55020 No alias Transcription factor MYB120... 0.03 Orthogroups_2024-Update
Bradi2g24400 No alias myb domain protein 6 0.03 Orthogroups_2024-Update
Bradi2g40620 No alias myb domain protein 86 0.02 Orthogroups_2024-Update
Bradi4g09900 No alias myb domain protein 112 0.02 Orthogroups_2024-Update
Brara.A00330.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.02 Orthogroups_2024-Update
Brara.A03255.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
Brara.A03667.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.03 Orthogroups_2024-Update
Brara.B02106.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C00533.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
Brara.C01847.1 No alias MYB class-R2R3 subgroup-14 transcription factor 0.02 Orthogroups_2024-Update
Brara.E03155.1 No alias MYB class-R2R3 transcription factor 0.05 Orthogroups_2024-Update
Brara.F02806.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.03 Orthogroups_2024-Update
Brara.G01913.1 No alias accessory protein (LMI2) of floral meristem identity control 0.03 Orthogroups_2024-Update
Brara.H02857.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.02 Orthogroups_2024-Update
Brara.I01367.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
Brara.J01347.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
Brara.J01871.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G084799 No alias myb domain protein 12 0.02 Orthogroups_2024-Update
GRMZM2G395672 No alias myb domain protein 5 0.03 Orthogroups_2024-Update
GRMZM5G833253 No alias myb domain protein 63 0.02 Orthogroups_2024-Update
Glyma.01G211500 No alias myb domain protein 42 0.04 Orthogroups_2024-Update
Glyma.05G027000 No alias myb domain protein 94 0.03 Orthogroups_2024-Update
Glyma.10G014600 No alias myb domain protein 12 0.03 Orthogroups_2024-Update
Glyma.12G104800 No alias myb domain protein 14 0.04 Orthogroups_2024-Update
Glyma.14G069100 No alias myb domain protein 4 0.02 Orthogroups_2024-Update
Glyma.15G066800 No alias MYB-like 102 0.03 Orthogroups_2024-Update
Glyma.16G063700 No alias myb domain protein 40 0.03 Orthogroups_2024-Update
Glyma.17G085651 No alias myb domain protein 55 0.02 Orthogroups_2024-Update
Glyma.17G158000 No alias myb domain protein 84 0.04 Orthogroups_2024-Update
Glyma.19G257400 No alias myb domain protein 4 0.02 Orthogroups_2024-Update
Glyma.20G032900 No alias myb domain protein 106 0.02 Orthogroups_2024-Update
HORVU1Hr1G074260.1 No alias MYB class-R2R3 subgroup-4 transcription factor & MYB... 0.05 Orthogroups_2024-Update
HORVU6Hr1G060600.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G072450.2 No alias MYB class-R2R3 transcription factor & MYB class-R2R3... 0.02 Orthogroups_2024-Update
LOC_Os01g36460 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g49160 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
MA_128244g0010 No alias (at3g61250 : 275.0) Member of the R2R3 factor gene... 0.03 Orthogroups_2024-Update
MA_22140g0010 No alias (at4g38620 : 249.0) Encodes a R2R3 MYB protein which is... 0.04 Orthogroups_2024-Update
MA_37058g0010 No alias (at5g35550 : 158.0) TT2 encodes a R2R3 MYB domain... 0.03 Orthogroups_2024-Update
Mp3g23170.1 No alias transcription factor (MYB) 0.02 Orthogroups_2024-Update
PSME_00014669-RA No alias (at1g22640 : 190.0) MYB-type transcription factor (MYB3)... 0.03 Orthogroups_2024-Update
PSME_00031160-RA No alias (at4g38620 : 228.0) Encodes a R2R3 MYB protein which is... 0.04 Orthogroups_2024-Update
PSME_00041772-RA No alias (at5g15310 : 261.0) Member of the R2R3 factor gene... 0.05 Orthogroups_2024-Update
PSME_00041970-RA No alias (at1g22640 : 188.0) MYB-type transcription factor (MYB3)... 0.03 Orthogroups_2024-Update
PSME_00043973-RA No alias (at1g22640 : 191.0) MYB-type transcription factor (MYB3)... 0.03 Orthogroups_2024-Update
PSME_00052777-RA No alias (at4g38620 : 269.0) Encodes a R2R3 MYB protein which is... 0.04 Orthogroups_2024-Update
Potri.001G086700 No alias myb domain protein 111 0.02 Orthogroups_2024-Update
Potri.003G155700 No alias myb domain protein 67 0.03 Orthogroups_2024-Update
Potri.006G221500 No alias Duplicated homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.009G061500 No alias myb domain protein 83 0.03 Orthogroups_2024-Update
Potri.009G134000 No alias myb domain protein 4 0.03 Orthogroups_2024-Update
Potri.010G149900 No alias myb domain protein 108 0.02 Orthogroups_2024-Update
Potri.010G174500 No alias myb domain protein 67 0.02 Orthogroups_2024-Update
Potri.011G167600 No alias myb domain protein 103 0.03 Orthogroups_2024-Update
Potri.012G055600 No alias myb domain protein 62 0.03 Orthogroups_2024-Update
Potri.014G100800 No alias myb domain protein 7 0.03 Orthogroups_2024-Update
Potri.015G067700 No alias Duplicated homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G143500 No alias myb domain protein 17 0.03 Orthogroups_2024-Update
Seita.2G404100.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.04 Orthogroups_2024-Update
Seita.4G115200.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
Seita.6G190300.1 No alias MYB class-R2R3 subgroup-10/24 transcription factor 0.02 Orthogroups_2024-Update
Seita.7G284800.1 No alias MYB class-R2R3 subgroup-4 transcription factor & MYB... 0.05 Orthogroups_2024-Update
Seita.8G244100.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
Seita.9G384800.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.05 Orthogroups_2024-Update
Sobic.001G183100.1 No alias MYB class-R2R3 subgroup-18 transcription factor 0.04 Orthogroups_2024-Update
Sobic.001G397900.1 No alias MYB class-R2R3 subgroup-7 transcription factor 0.02 Orthogroups_2024-Update
Sobic.004G273800.1 No alias MYB class-R2R3 subgroup-3 transcription factor 0.02 Orthogroups_2024-Update
Sobic.004G303600.1 No alias regulatory protein *(LAF1) of phytochrome signalling... 0.03 Orthogroups_2024-Update
Sobic.005G020200.2 No alias MYB class-R2R3 subgroup-1 transcription factor 0.02 Orthogroups_2024-Update
Solyc03g059200 No alias MYB-related transcription factor (AHRD V3.3 *** A0A059PRF2_SALMI) 0.02 Orthogroups_2024-Update
Solyc03g112390 No alias R2R3MYB transcription factor 86 0.03 Orthogroups_2024-Update
Solyc05g008250 No alias R2R3MYB transcription factor 76 0.03 Orthogroups_2024-Update
Solyc10g008700 No alias R2R3MYB transcription factor 49 0.03 Orthogroups_2024-Update
Solyc11g011050 No alias R2R3MYB transcription factor 43 0.03 Orthogroups_2024-Update
Sopen03g001570 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen03g035070 No alias Myb-like DNA-binding domain 0.05 Orthogroups_2024-Update
Sopen05g003570 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen10g025190 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0004860 protein kinase inhibitor activity IEP Predicted GO
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0007050 cell cycle arrest IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019210 kinase inhibitor activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0031226 intrinsic component of plasma membrane IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
CC GO:0046658 anchored component of plasma membrane IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 14 61
IPR001005 SANT/Myb 67 111
No external refs found!