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  5. PSME_00041783-RA

PSME_00041783-RA


Description : (at3g16500 : 145.0) phytochrome-associated protein 1 (PAP1); phytochrome-associated protein 1 (PAP1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 18 (TAIR:AT1G51950.1); Has 1982 Blast hits to 1978 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1982; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (q9lg86|iaa2_orysa : 141.0) Auxin-responsive protein IAA2 (Indoleacetic acid-induced protein 2) - Oryza sativa (Rice) & (reliability: 290.0) & (original description: no original description)


Gene families : OG_42_0000083 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041783-RA
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
Bradi2g49420 No alias phytochrome-associated protein 1 0.02 Orthogroups_2024-Update
Brara.F02433.1 No alias transcriptional repressor *(IAA/AUX) 0.02 Orthogroups_2024-Update
Glyma.14G185400 No alias indole-3-acetic acid inducible 9 0.03 Orthogroups_2024-Update
LOC_Os05g09480 No alias OsIAA16 - Auxin-responsive Aux/IAA gene family member, expressed 0.03 Orthogroups_2024-Update
MA_10431093g0030 No alias (p0c132|iaa30_orysa : 229.0) Auxin-responsive protein... 0.03 Orthogroups_2024-Update
MA_18664g0010 No alias (at3g16500 : 144.0) phytochrome-associated protein 1... 0.04 Orthogroups_2024-Update
Potri.002G044900 No alias indole-3-acetic acid inducible 14 0.02 Orthogroups_2024-Update
Potri.002G108000 No alias indole-3-acetic acid inducible 9 0.04 Orthogroups_2024-Update
Seita.5G126200.1 No alias transcriptional repressor *(IAA/AUX) 0.02 Orthogroups_2024-Update
Solyc04g076850 No alias entire 0.02 Orthogroups_2024-Update
Sopen03g039890 No alias AUX/IAA family 0.02 Orthogroups_2024-Update
Sopen09g033890 No alias AUX/IAA family 0.03 Orthogroups_2024-Update
Sopen12g003200 No alias AUX/IAA family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0007155 cell adhesion IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0022610 biological adhesion IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
CC GO:0070461 SAGA-type complex IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 124 578
No external refs found!