Description : (at5g22880 : 162.0) Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.; histone B2 (HTB2); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o22582|h2b_goshi : 160.0) Histone H2B - Gossypium hirsutum (Upland cotton) & (reliability: 324.0) & (original description: no original description)
Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00041882-RA | |
Cluster | HCCA clusters: Cluster_170 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At3g45980 | No alias | Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6] | 0.03 | Orthogroups_2024-Update | |
Glyma.03G172500 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.19G173400 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU1Hr1G056530.1 | No alias | histone *(H2B) | 0.04 | Orthogroups_2024-Update | |
HORVU3Hr1G013680.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G086610.4 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
HORVU6Hr1G015760.1 | No alias | histone *(H2B) | 0.04 | Orthogroups_2024-Update | |
HORVU7Hr1G110310.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
MA_9293473g0010 | No alias | (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... | 0.04 | Orthogroups_2024-Update | |
PSME_00025825-RA | No alias | (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... | 0.04 | Orthogroups_2024-Update | |
Potri.009G028001 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
Seita.5G375500.1 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
Sobic.003G200501.1 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
Solyc03g071620 | No alias | Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEA | InterProScan predictions |
MF | GO:0003676 | nucleic acid binding | IEA | InterProScan predictions |
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004345 | glucose-6-phosphate dehydrogenase activity | IEP | Predicted GO |
BP | GO:0005996 | monosaccharide metabolic process | IEP | Predicted GO |
BP | GO:0006006 | glucose metabolic process | IEP | Predicted GO |
BP | GO:0019318 | hexose metabolic process | IEP | Predicted GO |
MF | GO:0050661 | NADP binding | IEP | Predicted GO |
No external refs found! |