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  5. PSME_00041909-RA

PSME_00041909-RA


Description : (at1g12300 : 333.0) Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 69404 Blast hits to 15469 proteins in 318 species: Archae - 6; Bacteria - 74; Metazoa - 1057; Fungi - 1243; Plants - 64555; Viruses - 0; Other Eukaryotes - 2469 (source: NCBI BLink). & (q76c99|rf1_orysa : 288.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 616.0) & (original description: no original description)


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041909-RA
Cluster HCCA clusters: Cluster_204

Target Alias Description ECC score Gene Family Method Actions
MA_78481g0010 No alias (at1g63130 : 360.0) Transacting siRNA generating locus.... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 108 137
IPR002885 Pentatricopeptide_repeat 385 434
IPR002885 Pentatricopeptide_repeat 56 104
IPR002885 Pentatricopeptide_repeat 210 259
IPR002885 Pentatricopeptide_repeat 140 189
IPR002885 Pentatricopeptide_repeat 315 363
IPR002885 Pentatricopeptide_repeat 277 309
IPR002885 Pentatricopeptide_repeat 452 482
No external refs found!