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  5. PSME_00041966-RA

PSME_00041966-RA


Description : (at1g72040 : 377.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxynucleoside kinase (InterPro:IPR002624); Has 2859 Blast hits to 2855 proteins in 704 species: Archae - 0; Bacteria - 1629; Metazoa - 493; Fungi - 0; Plants - 69; Viruses - 71; Other Eukaryotes - 597 (source: NCBI BLink). & (reliability: 754.0) & (original description: no original description)


Gene families : OG_42_0001388 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001388_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00041966-RA
Cluster HCCA clusters: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
156060 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
GRMZM2G147213 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
MA_892200g0010 No alias (at1g72040 : 469.0) P-loop containing nucleoside... 0.03 Orthogroups_2024-Update
PSME_00024154-RA No alias (at1g72040 : 224.0) P-loop containing nucleoside... 0.04 Orthogroups_2024-Update
Sobic.002G095300.1 No alias multisubstrate deoxyribonucleoside kinase *(TK2) &... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Predicted GO
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
InterPro domains Description Start Stop
IPR031314 DNK_dom 88 284
No external refs found!