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  5. PSME_00042060-RA

PSME_00042060-RA


Description : (at5g64570 : 954.0) Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.; beta-D-xylosidase 4 (XYL4); FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p83344|xynb_prupe : 498.0) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152) (Fragment) - Prunus persica (Peach) & (reliability: 1908.0) & (original description: no original description)


Gene families : OG_42_0000397 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000397_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042060-RA
Cluster HCCA clusters: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
112087 No alias Glycosyl hydrolase family protein 0.02 Orthogroups_2024-Update
A4A49_38116 No alias putative beta-d-xylosidase 2 0.04 Orthogroups_2024-Update
At1g02640 No alias Probable beta-D-xylosidase 2... 0.02 Orthogroups_2024-Update
Brara.F02936.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.02 Orthogroups_2024-Update
Cre03.g200655 No alias DegP protease 9 0.01 Orthogroups_2024-Update
Glyma.06G105300 No alias Glycosyl hydrolase family protein 0.03 Orthogroups_2024-Update
Glyma.09G202900 No alias Glycosyl hydrolase family protein 0.02 Orthogroups_2024-Update
MA_10426142g0010 No alias (at5g10560 : 843.0) Glycosyl hydrolase family protein;... 0.04 Orthogroups_2024-Update
MA_4577g0010 No alias (at5g64570 : 920.0) Encodes a beta-d-xylosidase that... 0.02 Orthogroups_2024-Update
PSME_00032922-RA No alias (at5g10560 : 854.0) Glycosyl hydrolase family protein;... 0.08 Orthogroups_2024-Update
PSME_00042582-RA No alias (at5g64570 : 979.0) Encodes a beta-d-xylosidase that... 0.04 Orthogroups_2024-Update
Potri.005G168500 No alias Glycosyl hydrolase family protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR026891 Fn3-like 693 760
IPR002772 Glyco_hydro_3_C 398 629
IPR001764 Glyco_hydro_3_N 108 352
No external refs found!