Description : (at1g11290 : 595.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 102.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1092.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00042206-RA | |
Cluster | HCCA clusters: Cluster_105 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
101093 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi1g20230 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g25480 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g37360 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.A02436.1 | No alias | RNA editing factor *(CRR2) | 0.04 | Orthogroups_2024-Update | |
Brara.H00716.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Glyma.08G117400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G088000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G236700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
HORVU5Hr1G024180.8 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os03g64370 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_11454g0010 | No alias | (at4g13650 : 676.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_127785g0010 | No alias | (at2g03880 : 512.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_141034g0010 | No alias | (at4g33170 : 601.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
MA_16917g0010 | No alias | (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_175623g0010 | No alias | (at2g03880 : 559.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_183738g0010 | No alias | (at3g12770 : 617.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
MA_291996g0010 | No alias | (at1g11290 : 549.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
MA_2991g0010 | No alias | (at2g27610 : 718.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_322292g0010 | No alias | (at4g18750 : 684.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_36655g0010 | No alias | (at4g39530 : 586.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_385322g0010 | No alias | (at1g08070 : 385.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
MA_4438g0010 | No alias | (at1g11290 : 719.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_501007g0010 | No alias | (at4g13650 : 662.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_63139g0020 | No alias | (at4g13650 : 686.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_656915g0010 | No alias | (at4g18750 : 657.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_658463g0010 | No alias | (at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_7907g0020 | No alias | (at3g57430 : 717.0) Encodes a chloroplast RNA editing... | 0.05 | Orthogroups_2024-Update | |
MA_98224g0010 | No alias | (at4g13650 : 670.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
Seita.3G267700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.4G225800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.7G042500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.9G548100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.001G513000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.002G384800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G114300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Solyc01g090510 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.02 | Orthogroups_2024-Update | |
Sopen01g041280 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen09g033130 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004427 | inorganic diphosphatase activity | IEP | Predicted GO |
MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
MF | GO:0009678 | hydrogen-translocating pyrophosphatase activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 413 | 460 |
IPR002885 | Pentatricopeptide_repeat | 211 | 258 |
IPR002885 | Pentatricopeptide_repeat | 311 | 358 |
IPR002885 | Pentatricopeptide_repeat | 112 | 142 |
IPR002885 | Pentatricopeptide_repeat | 488 | 511 |
IPR002885 | Pentatricopeptide_repeat | 553 | 581 |
IPR032867 | DYW_dom | 586 | 710 |
No external refs found! |