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  5. PSME_00042213-RA

PSME_00042213-RA


Description : (at1g09560 : 119.0) germin-like protein (GLP5); germin-like protein 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 1766 Blast hits to 1756 proteins in 200 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 67; Plants - 1458; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). & (q9s8p4|rhre_pea : 106.0) Rhicadhesin receptor precursor (Germin-like protein) - Pisum sativum (Garden pea) & (reliability: 238.0) & (original description: no original description)


Gene families : OG_42_0000022 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042213-RA
Cluster HCCA clusters: Cluster_388

Target Alias Description ECC score Gene Family Method Actions
109968 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
109995 No alias RmlC-like cupins superfamily protein 0.04 Orthogroups_2024-Update
228015 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
228582 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
229747 No alias germin-like protein 5 0.04 Orthogroups_2024-Update
270502 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
271728 No alias RmlC-like cupins superfamily protein 0.04 Orthogroups_2024-Update
428138 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
92738 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
A4A49_13720 No alias nectarin-1 0.04 Orthogroups_2024-Update
At1g74820 No alias Germin-like protein subfamily T member 3... 0.04 Orthogroups_2024-Update
At3g04150 No alias RmlC-like cupins superfamily protein... 0.02 Orthogroups_2024-Update
At3g04170 No alias Germin-like protein subfamily 1 member 3... 0.03 Orthogroups_2024-Update
At3g05930 No alias Germin-like protein subfamily 2 member 3... 0.03 Orthogroups_2024-Update
At5g38960 No alias Putative germin-like protein subfamily 1 member 12... 0.03 Orthogroups_2024-Update
Bradi1g04907 No alias germin-like protein subfamily 2 member 2 precursor 0.05 Orthogroups_2024-Update
Bradi2g11050 No alias germin-like protein subfamily 2 member 2 precursor 0.03 Orthogroups_2024-Update
Bradi2g60870 No alias germin-like protein subfamily 2 member 2 precursor 0.03 Orthogroups_2024-Update
Bradi3g15210 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
Brara.J00095.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G149714 No alias RmlC-like cupins superfamily protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G034100.5 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G066330.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G107860.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU4Hr1G005380.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU4Hr1G090190.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G066380.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G089510.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00516_0040 kfl00516_0040_v1.... (at3g62020 : 122.0) germin-like protein (GLP10);... 0.02 Orthogroups_2024-Update
LOC_Os02g32980 No alias Cupin domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g44880 No alias Cupin domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g48750 No alias Cupin domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os08g13440 No alias cupin domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g05840 No alias Cupin domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_3366g0010 No alias (at1g09560 : 259.0) germin-like protein (GLP5);... 0.04 Orthogroups_2024-Update
MA_90151g0010 No alias (at1g09560 : 194.0) germin-like protein (GLP5);... 0.03 Orthogroups_2024-Update
PSME_00043689-RA No alias (at1g09560 : 232.0) germin-like protein (GLP5);... 0.05 Orthogroups_2024-Update
PSME_00054465-RA No alias (at1g09560 : 210.0) germin-like protein (GLP5);... 0.04 Orthogroups_2024-Update
PSME_00055622-RA No alias (at1g09560 : 259.0) germin-like protein (GLP5);... 0.04 Orthogroups_2024-Update
Potri.002G184900 No alias germin-like protein 10 0.04 Orthogroups_2024-Update
Potri.004G179800 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
Potri.011G163800 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
Potri.013G064000 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G180600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.3G310700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G131200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G050100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G065900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc01g088280 No alias Germin family protein (AHRD V3.3 *** G7I5N4_MEDTR) 0.03 Orthogroups_2024-Update
Sopen01g044840 No alias Cupin 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0045735 nutrient reservoir activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006045 Cupin_1 66 118
No external refs found!