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  5. PSME_00042237-RA

PSME_00042237-RA


Description : (at2g17290 : 108.0) Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK3 is also a member of the Arabidopsis CDPK family.; calcium dependent protein kinase 6 (CPK6); FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of anion channel activity, protein amino acid phosphorylation, N-terminal protein myristoylation, abscisic acid mediated signaling pathway, regulation of stomatal movement; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calmodulin-domain protein kinase 5 (TAIR:AT4G35310.1); Has 133264 Blast hits to 125497 proteins in 3863 species: Archae - 149; Bacteria - 13464; Metazoa - 49073; Fungi - 17503; Plants - 30048; Viruses - 473; Other Eukaryotes - 22554 (source: NCBI BLink). & (p28583|cdpk_soybn : 96.7) Calcium-dependent protein kinase SK5 (EC 2.7.11.1) (CDPK) - Glycine max (Soybean) & (reliability: 216.0) & (original description: no original description)


Gene families : OG_42_0000037 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042237-RA
Cluster HCCA clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Bradi3g32187 No alias Calcium-dependent protein kinase family protein 0.04 Orthogroups_2024-Update
Brara.A00300.1 No alias calcium sensor and kinase *(CPK) & CDPK protein kinase &... 0.02 Orthogroups_2024-Update
Cre17.g705000 No alias calcium-dependent protein kinase 17 0.01 Orthogroups_2024-Update
Glyma.07G232400 No alias calcium-dependent protein kinase 17 0.04 Orthogroups_2024-Update
Kfl00445_0090 kfl00445_0090_v1.1 (at5g19360 : 642.0) member of Calcium Dependent Protein... 0.02 Orthogroups_2024-Update
LOC_Os11g07040 No alias CAMK_CAMK_like.43 - CAMK includes calcium/calmodulin... 0.02 Orthogroups_2024-Update
Seita.2G331100.1 No alias CDPK protein kinase & calcium sensor and kinase *(CPK) &... 0.02 Orthogroups_2024-Update
Seita.5G369300.1 No alias CDPK protein kinase & calcium sensor and kinase *(CPK) &... 0.04 Orthogroups_2024-Update
Solyc01g112250 No alias Calcium-dependent protein kinase family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc11g018610 No alias Calcium-dependent protein kinase (AHRD V3.3 *** H6UM40_TOBAC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 38 64
No external refs found!