1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00042354-RA

PSME_00042354-RA


Description : (p46519|lea14_soybn : 144.0) Desiccation protectant protein Lea14 homolog - Glycine max (Soybean) & (at1g01470 : 129.0) Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.; LATE EMBRYOGENESIS ABUNDANT 14 (LEA14); CONTAINS InterPro DOMAIN/s: Water stress and hypersensitive response domain (InterPro:IPR013990), Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (TAIR:AT2G46140.1); Has 340 Blast hits to 340 proteins in 93 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 329; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description)


Gene families : OG_42_0002698 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002698_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042354-RA
Cluster HCCA clusters: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
At1g01470 No alias LSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178W160] 0.02 Orthogroups_2024-Update
LOC_Os01g12580 No alias late embryogenesis abundant protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_121405g0010 No alias (p46518|lea14_goshi : 156.0) Late embryogenesis abundant... 0.03 Orthogroups_2024-Update
Solyc01g095140 No alias Late embryogenesis abundant protein (AHRD V3.3 *** B5TV69_CAMSI) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
InterPro domains Description Start Stop
IPR004864 LEA_2 48 144
No external refs found!