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  5. PSME_00042409-RA

PSME_00042409-RA


Description : (at2g01250 : 328.0) Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, chloroplast, plasma membrane, large ribosomal subunit, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1075 Blast hits to 1075 proteins in 310 species: Archae - 55; Bacteria - 0; Metazoa - 442; Fungi - 204; Plants - 182; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink). & (reliability: 656.0) & (original description: no original description)


Gene families : OG_42_0001114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042409-RA
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
103994 No alias Ribosomal protein L30/L7 family protein 0.04 Orthogroups_2024-Update
A4A49_59282 No alias 60s ribosomal protein l7-2 0.02 Orthogroups_2024-Update
AC190609.3_FG003 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
Bradi1g04950 No alias Ribosomal protein L30/L7 family protein 0.04 Orthogroups_2024-Update
Bradi5g20900 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
Brara.B02397.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.B03026.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.D02679.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Brara.F03496.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Brara.I02011.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Cre12.g537800 No alias Ribosomal protein L30/L7 family protein 0.08 Orthogroups_2024-Update
GRMZM2G107336 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
Glyma.07G020000 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
Glyma.08G222100 No alias Ribosomal protein L30/L7 family protein 0.06 Orthogroups_2024-Update
Glyma.09G061000 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
Glyma.15G167400 No alias Ribosomal protein L30/L7 family protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G100970.4 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
HORVU5Hr1G108990.2 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
LOC_Os04g51630 No alias 60S ribosomal protein L7, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g42920 No alias 60S ribosomal protein L7, putative, expressed 0.02 Orthogroups_2024-Update
MA_109845g0010 No alias (at2g01250 : 278.0) Ribosomal protein L30/L7 family... 0.04 Orthogroups_2024-Update
MA_47548g0010 No alias (at2g01250 : 324.0) Ribosomal protein L30/L7 family... 0.05 Orthogroups_2024-Update
Mp3g13040.1 No alias component RPL7 of LSU proteome component 0.03 Orthogroups_2024-Update
Potri.006G073200 No alias Ribosomal protein L30/L7 family protein 0.04 Orthogroups_2024-Update
Potri.008G008000 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
Potri.018G140300 No alias Ribosomal protein L30/L7 family protein 0.04 Orthogroups_2024-Update
Pp1s243_40V6 No alias 60s ribosomal protein l7-2 0.04 Orthogroups_2024-Update
Pp1s7_369V6 No alias 60s ribosomal protein l7-2 0.02 Orthogroups_2024-Update
Seita.6G017200.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Seita.7G228400.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Sobic.007G085001.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Solyc06g068400 No alias 60S ribosomal protein L7 (AHRD V3.3 *** B9GMC3_POPTR) 0.04 Orthogroups_2024-Update
Solyc07g008370 No alias 60S ribosomal protein L7 (AHRD V3.3 *** A0A072VPV6_MEDTR) 0.09 Orthogroups_2024-Update
Solyc08g075090 No alias bHLH transcription factor144 0.09 Orthogroups_2024-Update
Sopen07g004260 No alias Ribosomal L30 N-terminal domain 0.12 Orthogroups_2024-Update
Sopen08g023720 No alias Ribosomal L30 N-terminal domain 0.08 Orthogroups_2024-Update
Sopen12g032080 No alias Ribosomal L30 N-terminal domain 0.1 Orthogroups_2024-Update
evm.model.contig_2085.3 No alias (at3g13580 : 237.0) Ribosomal protein L30/L7 family... 0.07 Orthogroups_2024-Update
evm.model.tig00020909.42 No alias (at2g44120 : 205.0) Ribosomal protein L30/L7 family... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012988 Ribosomal_L30_N 16 86
IPR016082 Ribosomal_L30_ferredoxin-like 91 141
No external refs found!