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  5. Sopen06g010330

Sopen06g010330


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g010330
Cluster HCCA clusters: Cluster_413

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g17292 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Solyc04g040100 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g012010 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g008200 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g004560 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g030350 No alias Rhamnogalacturonate lyase family 0.03 Orthogroups_2024-Update
Sopen06g012340 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen07g006330 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g014830 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen09g020310 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen10g007750 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g022720 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
evm.model.contig_3413.7 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_3474.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_3759.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 204 300
IPR000477 RT_dom 741 900
No external refs found!