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  5. PSME_00042541-RA

PSME_00042541-RA


Description : (at2g25490 : 492.0) Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3.; EIN3-binding F box protein 1 (EBF1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 2 (TAIR:AT5G25350.1); Has 13069 Blast hits to 4728 proteins in 296 species: Archae - 0; Bacteria - 528; Metazoa - 5097; Fungi - 1628; Plants - 4199; Viruses - 9; Other Eukaryotes - 1608 (source: NCBI BLink). & (reliability: 984.0) & (original description: no original description)


Gene families : OG_42_0001584 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001584_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042541-RA
Cluster HCCA clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Bradi3g07397 No alias EIN3-binding F box protein 1 0.04 Orthogroups_2024-Update
Glyma.14G116800 No alias EIN3-binding F box protein 1 0.04 Orthogroups_2024-Update
Glyma.17G113900 No alias EIN3-binding F box protein 1 0.03 Orthogroups_2024-Update
HORVU1Hr1G089690.6 No alias substrate(EIN3) adaptor of SCF E3 ubiquitin ligase *(EBF) 0.04 Orthogroups_2024-Update
Sobic.004G083300.1 No alias substrate(EIN3) adaptor of SCF E3 ubiquitin ligase *(EBF) 0.02 Orthogroups_2024-Update
Sobic.010G186200.1 No alias substrate(EIN3) adaptor of SCF E3 ubiquitin ligase *(EBF) 0.04 Orthogroups_2024-Update
Solyc08g060810 No alias EIN3-binding F-box protein 2 0.04 Orthogroups_2024-Update
Solyc12g009560 No alias EIN3-binding F-box protein 1 0.03 Orthogroups_2024-Update
evm.model.tig00001224.22 No alias (at5g08620 : 93.6) Similar in sequence to DEAD-box RNA... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 286 309
IPR001611 Leu-rich_rpt 235 258
IPR001611 Leu-rich_rpt 581 600
No external refs found!