PSME_00042558-RA

Description : (at2g38290 : 588.0) encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.; ammonium transporter 2 (AMT2); FUNCTIONS IN: ammonium transmembrane transporter activity, high affinity secondary active ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E/D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;2 (TAIR:AT1G64780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1176.0) & (original description: no original description)

Gene families : OG_42_0000450 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000450_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00042558-RA
Cluster	HCCA clusters: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g02420	No alias	ammonium transporter 2	0.06	Orthogroups_2024-Update
Bradi2g22670	No alias	ammonium transporter 2	0.04	Orthogroups_2024-Update
Glyma.18G204800	No alias	ammonium transporter 2	0.03	Orthogroups_2024-Update
HORVU5Hr1G118590.1	No alias	ammonium transporter *(AMT2/3)	0.04	Orthogroups_2024-Update
Kfl00008_0180	kfl00008_0180_v1.1	(at2g38290 : 498.0) encodes a high-affinity ammonium...	0.01	Orthogroups_2024-Update
Kfl00056_0140	kfl00056_0140_v1.1	(at2g38290 : 510.0) encodes a high-affinity ammonium...	0.01	Orthogroups_2024-Update
LOC_Os03g62200	No alias	ammonium transporter protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_226001g0010	No alias	(at2g38290 : 636.0) encodes a high-affinity ammonium...	0.04	Orthogroups_2024-Update
MA_55379g0010	No alias	(at2g38290 : 577.0) encodes a high-affinity ammonium...	0.05	Orthogroups_2024-Update
PSME_00029020-RA	No alias	(at2g38290 : 569.0) encodes a high-affinity ammonium...	0.04	Orthogroups_2024-Update
PSME_00029021-RA	No alias	(at2g38290 : 609.0) encodes a high-affinity ammonium...	0.03	Orthogroups_2024-Update
Potri.006G102800	No alias	ammonium transporter 2	0.02	Orthogroups_2024-Update
Seita.5G395800.1	No alias	ammonium transporter *(AMT2/3)	0.03	Orthogroups_2024-Update
Seita.9G019500.1	No alias	ammonium transporter *(AMT2/3)	0.04	Orthogroups_2024-Update
Sobic.009G168700.1	No alias	ammonium transporter *(AMT2/3)	0.02	Orthogroups_2024-Update
Solyc03g033300	No alias	Ammonium transporter (AHRD V3.3 *** K4BFK2_SOLLC)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008324	cation transmembrane transporter activity	None	Extended
MF	GO:0008519	ammonium transmembrane transporter activity	IEA	InterProScan predictions
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
BP	GO:0015696	ammonium transport	IEA	InterProScan predictions
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Predicted GO
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0004420	hydroxymethylglutaryl-CoA reductase (NADPH) activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Predicted GO
BP	GO:0005991	trehalose metabolic process	IEP	Predicted GO
BP	GO:0005992	trehalose biosynthetic process	IEP	Predicted GO
BP	GO:0006163	purine nucleotide metabolic process	IEP	Predicted GO
BP	GO:0006732	coenzyme metabolic process	IEP	Predicted GO
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Predicted GO
MF	GO:0008131	primary amine oxidase activity	IEP	Predicted GO
BP	GO:0008152	metabolic process	IEP	Predicted GO
BP	GO:0009117	nucleotide metabolic process	IEP	Predicted GO
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Predicted GO
BP	GO:0009259	ribonucleotide metabolic process	IEP	Predicted GO
BP	GO:0009308	amine metabolic process	IEP	Predicted GO
MF	GO:0009916	alternative oxidase activity	IEP	Predicted GO
MF	GO:0010333	terpene synthase activity	IEP	Predicted GO
MF	GO:0015035	protein disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Predicted GO
BP	GO:0015936	coenzyme A metabolic process	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Predicted GO
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Predicted GO
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predicted GO
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predicted GO
BP	GO:0019637	organophosphate metabolic process	IEP	Predicted GO
BP	GO:0019693	ribose phosphate metabolic process	IEP	Predicted GO
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0048038	quinone binding	IEP	Predicted GO
BP	GO:0051186	cofactor metabolic process	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO
BP	GO:0072521	purine-containing compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR024041	NH4_transpt_AmtB-like_dom	24	430

External Links

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PSME_00042558-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation