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  5. PSME_00042582-RA

PSME_00042582-RA


Description : (at5g64570 : 979.0) Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.; beta-D-xylosidase 4 (XYL4); FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p83344|xynb_prupe : 518.0) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152) (Fragment) - Prunus persica (Peach) & (reliability: 1958.0) & (original description: no original description)


Gene families : OG_42_0000397 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000397_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042582-RA

Target Alias Description ECC score Gene Family Method Actions
419541 No alias Glycosyl hydrolase family protein 0.03 Orthogroups_2024-Update
A4A49_38116 No alias putative beta-d-xylosidase 2 0.03 Orthogroups_2024-Update
Bradi4g20197 No alias Glycosyl hydrolase family protein 0.04 Orthogroups_2024-Update
Bradi5g23470 No alias beta-D-xylosidase 4 0.04 Orthogroups_2024-Update
Cre03.g200655 No alias DegP protease 9 0.02 Orthogroups_2024-Update
Glyma.09G038600 No alias beta-xylosidase 1 0.03 Orthogroups_2024-Update
LOC_Os04g44840 No alias glycosyl hydrolase family 3 protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00014058-RA No alias (at5g10560 : 724.0) Glycosyl hydrolase family protein;... 0.04 Orthogroups_2024-Update
PSME_00023182-RA No alias (at5g10560 : 365.0) Glycosyl hydrolase family protein;... 0.04 Orthogroups_2024-Update
PSME_00030271-RA No alias (at5g64570 : 933.0) Encodes a beta-d-xylosidase that... 0.03 Orthogroups_2024-Update
PSME_00041045-RA No alias (at5g64570 : 329.0) Encodes a beta-d-xylosidase that... 0.04 Orthogroups_2024-Update
PSME_00042060-RA No alias (at5g64570 : 954.0) Encodes a beta-d-xylosidase that... 0.04 Orthogroups_2024-Update
Sobic.005G110460.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.07 Orthogroups_2024-Update
Sobic.006G235600.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.05 Orthogroups_2024-Update
Solyc01g104950 No alias LEXYL2 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002772 Glyco_hydro_3_C 397 627
IPR026891 Fn3-like 687 756
IPR001764 Glyco_hydro_3_N 69 352
No external refs found!