1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00042713-RA

PSME_00042713-RA


Description : (at3g10915 : 156.0) Reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G15280.1). & (reliability: 286.0) & (original description: no original description)


Gene families : OG_42_0000160 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000160_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042713-RA
Cluster HCCA clusters: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
113819 No alias VIRB2-interacting protein 2 0.02 Orthogroups_2024-Update
At2g15280 No alias Reticulon-like protein B10... 0.02 Orthogroups_2024-Update
At2g46170 No alias Reticulon-like protein B5... 0.03 Orthogroups_2024-Update
Brara.B01775.1 No alias ER-tubule curvature-inducing protein *(Reticulon) 0.03 Orthogroups_2024-Update
GRMZM2G031308 No alias VIRB2-interacting protein 1 0.04 Orthogroups_2024-Update
Glyma.08G019300 No alias VIRB2-interacting protein 2 0.06 Orthogroups_2024-Update
Glyma.16G030700 No alias Reticulon family protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G008400.2 No alias ER-tubule curvature-inducing protein *(Reticulon) 0.02 Orthogroups_2024-Update
LOC_Os01g04640 No alias reticulon domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g45050 No alias reticulon domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Mp6g03260.1 No alias ER-associated protein (Reticulon) 0.03 Orthogroups_2024-Update
Pp1s246_60V6 No alias reticulon family protein 0.02 Orthogroups_2024-Update
Pp1s351_49V6 No alias seed maturation protein 0.02 Orthogroups_2024-Update
Seita.5G279000.1 No alias ER-tubule curvature-inducing protein *(Reticulon) 0.01 Orthogroups_2024-Update
Seita.5G309800.1 No alias ER-tubule curvature-inducing protein *(Reticulon) 0.02 Orthogroups_2024-Update
Seita.5G383400.1 No alias ER-tubule curvature-inducing protein *(Reticulon) 0.02 Orthogroups_2024-Update
Sobic.003G288600.1 No alias ER-tubule curvature-inducing protein *(Reticulon) 0.03 Orthogroups_2024-Update
Sobic.004G118200.3 No alias ER-tubule curvature-inducing protein *(Reticulon) 0.04 Orthogroups_2024-Update
Sopen08g030030 No alias Reticulon 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003388 Reticulon 101 256
No external refs found!